Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA3Q9Y5H8 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC23.84■■□□□ 1.41
PCDHA3Q9Y5H8 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA3Q9Y5H8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
PCDHA3Q9Y5H8 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHA3Q9Y5H8 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDHA3Q9Y5H8 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
PCDHA3Q9Y5H8 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHA3Q9Y5H8 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
PCDHA3Q9Y5H8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
PCDHA3Q9Y5H8 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA3Q9Y5H8 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA3Q9Y5H8 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA3Q9Y5H8 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.81■■□□□ 1.4
PCDHA3Q9Y5H8 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA3Q9Y5H8 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.81■■□□□ 1.4
PCDHA3Q9Y5H8 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHA3Q9Y5H8 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
PCDHA3Q9Y5H8 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.8■■□□□ 1.4
PCDHA3Q9Y5H8 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA3Q9Y5H8 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 AC120024.1-201ENST00000562672 995 ntBASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA3Q9Y5H8 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA3Q9Y5H8 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA3Q9Y5H8 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA3Q9Y5H8 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA3Q9Y5H8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA3Q9Y5H8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA3Q9Y5H8 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 AC004987.1-201ENST00000428627 508 ntBASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 PVT1_1.1-201ENST00000615125 194 ntBASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA3Q9Y5H8 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA3Q9Y5H8 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms