Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
TRAIPQ9BWF2 MIR935-201ENST00000401179 91 ntBASIC24.96■■□□□ 1.59
TRAIPQ9BWF2 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
TRAIPQ9BWF2 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
TRAIPQ9BWF2 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
TRAIPQ9BWF2 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
TRAIPQ9BWF2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 DUX4L19-201ENST00000557448 1267 ntBASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 AL136162.1-201ENST00000607711 1078 ntBASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
TRAIPQ9BWF2 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 AC135279.3-201ENST00000610945 1311 ntBASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 AL031432.3-201ENST00000607698 485 ntBASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 AC142381.3-201ENST00000568208 1670 ntBASIC24.94■■□□□ 1.58
TRAIPQ9BWF2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TRAIPQ9BWF2 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.93■■□□□ 1.58
TRAIPQ9BWF2 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.93■■□□□ 1.58
TRAIPQ9BWF2 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TRAIPQ9BWF2 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TRAIPQ9BWF2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
TRAIPQ9BWF2 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
TRAIPQ9BWF2 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TRAIPQ9BWF2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
TRAIPQ9BWF2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.92■■□□□ 1.58
TRAIPQ9BWF2 SUDS3P1-201ENST00000505831 966 ntBASIC24.92■■□□□ 1.58
TRAIPQ9BWF2 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TRAIPQ9BWF2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.92■■□□□ 1.58
TRAIPQ9BWF2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 EDA-201ENST00000338901 1233 ntBASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 AC092171.4-201ENST00000609130 632 ntBASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC24.91■■□□□ 1.58
TRAIPQ9BWF2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
TRAIPQ9BWF2 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.9■■□□□ 1.58
TRAIPQ9BWF2 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
TRAIPQ9BWF2 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC24.9■■□□□ 1.58
TRAIPQ9BWF2 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.9■■□□□ 1.58
TRAIPQ9BWF2 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
TRAIPQ9BWF2 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
TRAIPQ9BWF2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
TRAIPQ9BWF2 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
TRAIPQ9BWF2 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.89■■□□□ 1.58
TRAIPQ9BWF2 AC024257.2-201ENST00000549699 147 ntBASIC24.89■■□□□ 1.58
TRAIPQ9BWF2 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
TRAIPQ9BWF2 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
TRAIPQ9BWF2 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
TRAIPQ9BWF2 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
TRAIPQ9BWF2 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
TRAIPQ9BWF2 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
TRAIPQ9BWF2 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
TRAIPQ9BWF2 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.88■■□□□ 1.57
TRAIPQ9BWF2 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.88■■□□□ 1.57
TRAIPQ9BWF2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.88■■□□□ 1.57
TRAIPQ9BWF2 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 AC009102.2-201ENST00000606772 1639 ntBASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 AL355001.2-201ENST00000620617 1191 ntBASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 HLA-L-211ENST00000482052 1765 ntBASIC24.87■■□□□ 1.57
TRAIPQ9BWF2 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
TRAIPQ9BWF2 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
TRAIPQ9BWF2 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
TRAIPQ9BWF2 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 AC142381.2-201ENST00000566120 298 ntBASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 AC022211.4-201ENST00000625094 2161 ntBASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
TRAIPQ9BWF2 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms