Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 TSPY20P-201ENST00000450910 630 ntBASIC22.88■■□□□ 1.25
VPS13AQ96RL7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 AL355802.2-201ENST00000402069 882 ntBASIC22.88■■□□□ 1.25
VPS13AQ96RL7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
VPS13AQ96RL7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.87■■□□□ 1.25
VPS13AQ96RL7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 NTF6G-201ENST00000591094 616 ntBASIC22.87■■□□□ 1.25
VPS13AQ96RL7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
VPS13AQ96RL7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS13AQ96RL7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
VPS13AQ96RL7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.86■■□□□ 1.25
VPS13AQ96RL7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
VPS13AQ96RL7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
VPS13AQ96RL7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS13AQ96RL7 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS13AQ96RL7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC22.85■■□□□ 1.25
VPS13AQ96RL7 ST7-202ENST00000323984 2142 ntTSL 5 BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 ST7-207ENST00000393449 2127 ntTSL 5 BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 AC093827.2-201ENST00000512654 315 ntBASIC22.84■■□□□ 1.25
VPS13AQ96RL7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 AC092171.4-201ENST00000609130 632 ntBASIC22.84■■□□□ 1.25
VPS13AQ96RL7 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.84■■□□□ 1.25
VPS13AQ96RL7 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.83■■□□□ 1.25
VPS13AQ96RL7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS13AQ96RL7 AC073111.5-205ENST00000641717 521 ntBASIC22.83■■□□□ 1.25
VPS13AQ96RL7 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.83■■□□□ 1.25
VPS13AQ96RL7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC22.83■■□□□ 1.24
VPS13AQ96RL7 ERN1-208ENST00000606895 2068 ntBASIC22.82■■□□□ 1.24
VPS13AQ96RL7 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 NCF1B-203ENST00000435988 1254 ntBASIC22.82■■□□□ 1.24
VPS13AQ96RL7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 AL499627.2-201ENST00000606283 725 ntBASIC22.82■■□□□ 1.24
VPS13AQ96RL7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 BX842568.3-201ENST00000418104 571 ntBASIC22.82■■□□□ 1.24
VPS13AQ96RL7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
VPS13AQ96RL7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
VPS13AQ96RL7 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
VPS13AQ96RL7 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.8■■□□□ 1.24
VPS13AQ96RL7 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
VPS13AQ96RL7 AC026185.1-201ENST00000445748 174 ntBASIC22.8■■□□□ 1.24
VPS13AQ96RL7 AC245100.8-202ENST00000629247 1058 ntBASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms