Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LMX1AQ8TE12 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 AC105265.2-201ENST00000467189 838 ntBASIC22.3■■□□□ 1.16
LMX1AQ8TE12 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 AL161729.1-201ENST00000604104 1402 ntBASIC22.3■■□□□ 1.16
LMX1AQ8TE12 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
LMX1AQ8TE12 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 MIR939-201ENST00000401314 82 ntBASIC22.29■■□□□ 1.16
LMX1AQ8TE12 AP001330.3-201ENST00000520123 633 ntBASIC22.29■■□□□ 1.16
LMX1AQ8TE12 C17orf82-201ENST00000623772 1530 ntBASIC22.29■■□□□ 1.16
LMX1AQ8TE12 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LMX1AQ8TE12 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.28■■□□□ 1.16
LMX1AQ8TE12 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LMX1AQ8TE12 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LMX1AQ8TE12 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.27■■□□□ 1.16
LMX1AQ8TE12 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LMX1AQ8TE12 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.27■■□□□ 1.16
LMX1AQ8TE12 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.26■■□□□ 1.15
LMX1AQ8TE12 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LMX1AQ8TE12 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.26■■□□□ 1.15
LMX1AQ8TE12 RARRES2P6-201ENST00000567333 442 ntBASIC22.26■■□□□ 1.15
LMX1AQ8TE12 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.26■■□□□ 1.15
LMX1AQ8TE12 AC241377.3-202ENST00000626088 1088 ntBASIC22.26■■□□□ 1.15
LMX1AQ8TE12 AC241585.3-202ENST00000628937 1088 ntBASIC22.26■■□□□ 1.15
LMX1AQ8TE12 AC245100.8-202ENST00000629247 1058 ntBASIC22.26■■□□□ 1.15
LMX1AQ8TE12 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LMX1AQ8TE12 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LMX1AQ8TE12 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 AC091305.1-201ENST00000479476 895 ntBASIC22.25■■□□□ 1.15
LMX1AQ8TE12 AL138724.1-201ENST00000606771 1088 ntBASIC22.25■■□□□ 1.15
LMX1AQ8TE12 AC011298.3-201ENST00000615796 283 ntBASIC22.25■■□□□ 1.15
LMX1AQ8TE12 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.25■■□□□ 1.15
LMX1AQ8TE12 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 AC006455.2-201ENST00000429931 906 ntBASIC22.24■■□□□ 1.15
LMX1AQ8TE12 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LMX1AQ8TE12 AC022211.4-201ENST00000625094 2161 ntBASIC22.23■■□□□ 1.15
LMX1AQ8TE12 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LMX1AQ8TE12 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LMX1AQ8TE12 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.23■■□□□ 1.15
LMX1AQ8TE12 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.23■■□□□ 1.15
LMX1AQ8TE12 AC009086.3-201ENST00000623486 1008 ntBASIC22.23■■□□□ 1.15
LMX1AQ8TE12 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LMX1AQ8TE12 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LMX1AQ8TE12 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LMX1AQ8TE12 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 AC008764.7-201ENST00000593779 1081 ntBASIC22.22■■□□□ 1.15
LMX1AQ8TE12 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms