Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 AC022211.4-201ENST00000625094 2161 ntBASIC21.09■□□□□ 0.97
BEST3Q8N1M1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
BEST3Q8N1M1 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.08■□□□□ 0.97
BEST3Q8N1M1 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.08■□□□□ 0.96
BEST3Q8N1M1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
BEST3Q8N1M1 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
BEST3Q8N1M1 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
BEST3Q8N1M1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BEST3Q8N1M1 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
BEST3Q8N1M1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 UNC93B3-201ENST00000308076 687 ntBASIC21.05■□□□□ 0.96
BEST3Q8N1M1 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BEST3Q8N1M1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 PBX2P1-201ENST00000493219 1291 ntBASIC21.04■□□□□ 0.96
BEST3Q8N1M1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 AC005837.3-201ENST00000612163 286 ntBASIC21.04■□□□□ 0.96
BEST3Q8N1M1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.04■□□□□ 0.96
BEST3Q8N1M1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
BEST3Q8N1M1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BEST3Q8N1M1 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
BEST3Q8N1M1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BEST3Q8N1M1 AL136162.1-201ENST00000607711 1078 ntBASIC21.02■□□□□ 0.96
BEST3Q8N1M1 AC106739.1-201ENST00000617035 715 ntBASIC21.02■□□□□ 0.96
BEST3Q8N1M1 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BEST3Q8N1M1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.02■□□□□ 0.96
BEST3Q8N1M1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.02■□□□□ 0.95
BEST3Q8N1M1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms