Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.95■□□□□ 0.62
CCDC28AQ8IWP9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC28AQ8IWP9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28AQ8IWP9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC28AQ8IWP9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CCDC28AQ8IWP9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC28AQ8IWP9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 MIR3665-201ENST00000578708 105 ntBASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC28AQ8IWP9 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28AQ8IWP9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 AP006261.1-201ENST00000584783 668 ntBASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 AC142472.1-201ENST00000612013 1741 ntBASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28AQ8IWP9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC28AQ8IWP9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC28AQ8IWP9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC18.89■□□□□ 0.62
CCDC28AQ8IWP9 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC28AQ8IWP9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC28AQ8IWP9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC28AQ8IWP9 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC28AQ8IWP9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms