Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX53Q86TM3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX53Q86TM3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX53Q86TM3 AC097381.1-201ENST00000429019 1296 ntBASIC24.34■■□□□ 1.49
DDX53Q86TM3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC24.34■■□□□ 1.49
DDX53Q86TM3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.34■■□□□ 1.49
DDX53Q86TM3 AC136469.2-201ENST00000623944 1028 ntBASIC24.34■■□□□ 1.49
DDX53Q86TM3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX53Q86TM3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX53Q86TM3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.34■■□□□ 1.49
DDX53Q86TM3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
DDX53Q86TM3 AL161729.1-201ENST00000604104 1402 ntBASIC24.34■■□□□ 1.49
DDX53Q86TM3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX53Q86TM3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX53Q86TM3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX53Q86TM3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC24.33■■□□□ 1.49
DDX53Q86TM3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
DDX53Q86TM3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
DDX53Q86TM3 AC099791.1-201ENST00000416440 715 ntBASIC24.33■■□□□ 1.49
DDX53Q86TM3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
DDX53Q86TM3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.33■■□□□ 1.48
DDX53Q86TM3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
DDX53Q86TM3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
DDX53Q86TM3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.32■■□□□ 1.48
DDX53Q86TM3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.32■■□□□ 1.48
DDX53Q86TM3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.32■■□□□ 1.48
DDX53Q86TM3 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX53Q86TM3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX53Q86TM3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX53Q86TM3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX53Q86TM3 AC006455.2-201ENST00000429931 906 ntBASIC24.31■■□□□ 1.48
DDX53Q86TM3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX53Q86TM3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX53Q86TM3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX53Q86TM3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX53Q86TM3 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX53Q86TM3 IRS3P-201ENST00000223076 1006 ntBASIC24.3■■□□□ 1.48
DDX53Q86TM3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX53Q86TM3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.3■■□□□ 1.48
DDX53Q86TM3 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX53Q86TM3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.3■■□□□ 1.48
DDX53Q86TM3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX53Q86TM3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX53Q86TM3 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX53Q86TM3 MIR3181-201ENST00000578512 73 ntBASIC24.29■■□□□ 1.48
DDX53Q86TM3 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.29■■□□□ 1.48
DDX53Q86TM3 AC009086.3-201ENST00000623486 1008 ntBASIC24.29■■□□□ 1.48
DDX53Q86TM3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX53Q86TM3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
DDX53Q86TM3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX53Q86TM3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.28■■□□□ 1.48
DDX53Q86TM3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX53Q86TM3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX53Q86TM3 AC233992.3-201ENST00000607491 485 ntBASIC24.27■■□□□ 1.48
DDX53Q86TM3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX53Q86TM3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.27■■□□□ 1.48
DDX53Q86TM3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.27■■□□□ 1.48
DDX53Q86TM3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX53Q86TM3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
DDX53Q86TM3 AC087623.3-201ENST00000607047 1098 ntBASIC24.26■■□□□ 1.47
DDX53Q86TM3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC24.26■■□□□ 1.47
DDX53Q86TM3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX53Q86TM3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX53Q86TM3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DDX53Q86TM3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX53Q86TM3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX53Q86TM3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX53Q86TM3 HLA-L-211ENST00000482052 1765 ntBASIC24.25■■□□□ 1.47
DDX53Q86TM3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DDX53Q86TM3 BX842568.3-201ENST00000418104 571 ntBASIC24.25■■□□□ 1.47
DDX53Q86TM3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.25■■□□□ 1.47
DDX53Q86TM3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC24.25■■□□□ 1.47
DDX53Q86TM3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.25■■□□□ 1.47
DDX53Q86TM3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.25■■□□□ 1.47
DDX53Q86TM3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.25■■□□□ 1.47
DDX53Q86TM3 MPST-208ENST00000628507 698 ntTSL 5 BASIC24.25■■□□□ 1.47
DDX53Q86TM3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX53Q86TM3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
DDX53Q86TM3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms