Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 SNX5-217ENST00000606557 1087 ntBASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 AL035685.1-201ENST00000636663 812 ntBASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 MIR4787-201ENST00000607364 84 ntBASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM40Q6P9F5 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 ABCB10P4-201ENST00000566803 2184 ntBASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM40Q6P9F5 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM40Q6P9F5 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.78■■□□□ 1.08
TRIM40Q6P9F5 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM40Q6P9F5 AC092028.1-203ENST00000608262 953 ntBASIC21.78■■□□□ 1.08
TRIM40Q6P9F5 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM40Q6P9F5 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM40Q6P9F5 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM40Q6P9F5 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM40Q6P9F5 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM40Q6P9F5 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM40Q6P9F5 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.77■■□□□ 1.08
TRIM40Q6P9F5 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.77■■□□□ 1.08
TRIM40Q6P9F5 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.77■■□□□ 1.08
TRIM40Q6P9F5 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.77■■□□□ 1.08
TRIM40Q6P9F5 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
TRIM40Q6P9F5 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
TRIM40Q6P9F5 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
TRIM40Q6P9F5 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 ALDH1A3-203ENST00000557963 1670 ntBASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM40Q6P9F5 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM40Q6P9F5 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM40Q6P9F5 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
TRIM40Q6P9F5 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 MTDHP2-201ENST00000601468 714 ntBASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms