Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL28A1Q2UY09 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.83■■□□□ 1.09
COL28A1Q2UY09 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.82■■□□□ 1.08
COL28A1Q2UY09 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL28A1Q2UY09 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL28A1Q2UY09 AC092171.4-201ENST00000609130 632 ntBASIC21.82■■□□□ 1.08
COL28A1Q2UY09 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
COL28A1Q2UY09 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL28A1Q2UY09 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL28A1Q2UY09 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 SERBP1P1-201ENST00000396021 1160 ntBASIC21.81■■□□□ 1.08
COL28A1Q2UY09 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.81■■□□□ 1.08
COL28A1Q2UY09 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL28A1Q2UY09 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL28A1Q2UY09 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 AL031602.1-201ENST00000633169 911 ntBASIC21.79■■□□□ 1.08
COL28A1Q2UY09 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.79■■□□□ 1.08
COL28A1Q2UY09 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL28A1Q2UY09 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL28A1Q2UY09 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL28A1Q2UY09 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.77■■□□□ 1.08
COL28A1Q2UY09 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.77■■□□□ 1.08
COL28A1Q2UY09 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL28A1Q2UY09 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL28A1Q2UY09 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
COL28A1Q2UY09 AC097639.1-201ENST00000565519 1891 ntBASIC21.77■■□□□ 1.08
COL28A1Q2UY09 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 ABHD17AP1-201ENST00000358206 933 ntBASIC21.76■■□□□ 1.07
COL28A1Q2UY09 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4L2-201ENST00000561772 1275 ntBASIC21.76■■□□□ 1.07
COL28A1Q2UY09 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4L6-201ENST00000626483 1275 ntBASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4L1-201ENST00000627662 1275 ntBASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4L8-201ENST00000629013 1275 ntBASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4L3-201ENST00000630187 1275 ntBASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4L7-201ENST00000630678 1275 ntBASIC21.76■■□□□ 1.07
COL28A1Q2UY09 DUX4L5-201ENST00000630834 1275 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms