Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PDLIM4P50479 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDLIM4P50479 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PDLIM4P50479 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDLIM4P50479 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDLIM4P50479 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
PDLIM4P50479 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PDLIM4P50479 AC024257.2-201ENST00000549699 147 ntBASIC19.29■□□□□ 0.68
PDLIM4P50479 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.29■□□□□ 0.68
PDLIM4P50479 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.29■□□□□ 0.68
PDLIM4P50479 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM4P50479 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.28■□□□□ 0.68
PDLIM4P50479 EDA-201ENST00000338901 1233 ntBASIC19.28■□□□□ 0.68
PDLIM4P50479 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.28■□□□□ 0.68
PDLIM4P50479 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PDLIM4P50479 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM4P50479 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM4P50479 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PDLIM4P50479 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PDLIM4P50479 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.27■□□□□ 0.68
PDLIM4P50479 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
PDLIM4P50479 AL355001.2-201ENST00000620617 1191 ntBASIC19.27■□□□□ 0.68
PDLIM4P50479 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PDLIM4P50479 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.27■□□□□ 0.67
PDLIM4P50479 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PDLIM4P50479 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.27■□□□□ 0.67
PDLIM4P50479 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM4P50479 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.26■□□□□ 0.67
PDLIM4P50479 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM4P50479 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM4P50479 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM4P50479 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.26■□□□□ 0.67
PDLIM4P50479 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.26■□□□□ 0.67
PDLIM4P50479 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.26■□□□□ 0.67
PDLIM4P50479 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM4P50479 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.25■□□□□ 0.67
PDLIM4P50479 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.25■□□□□ 0.67
PDLIM4P50479 SYT6-210ENST00000641643 1587 ntBASIC19.25■□□□□ 0.67
PDLIM4P50479 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.25■□□□□ 0.67
PDLIM4P50479 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM4P50479 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.25■□□□□ 0.67
PDLIM4P50479 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.25■□□□□ 0.67
PDLIM4P50479 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.25■□□□□ 0.67
PDLIM4P50479 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM4P50479 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM4P50479 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.24■□□□□ 0.67
PDLIM4P50479 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.24■□□□□ 0.67
PDLIM4P50479 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.24■□□□□ 0.67
PDLIM4P50479 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PDLIM4P50479 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PDLIM4P50479 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM4P50479 LINC00543-201ENST00000567234 1845 ntBASIC19.23■□□□□ 0.67
PDLIM4P50479 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PDLIM4P50479 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM4P50479 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM4P50479 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.23■□□□□ 0.67
PDLIM4P50479 SUDS3P1-201ENST00000505831 966 ntBASIC19.23■□□□□ 0.67
PDLIM4P50479 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PDLIM4P50479 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.23■□□□□ 0.67
PDLIM4P50479 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM4P50479 AC145676.1-201ENST00000514988 2004 ntBASIC19.23■□□□□ 0.67
PDLIM4P50479 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.23■□□□□ 0.67
PDLIM4P50479 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM4P50479 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM4P50479 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM4P50479 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM4P50479 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.22■□□□□ 0.67
PDLIM4P50479 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PDLIM4P50479 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PDLIM4P50479 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM4P50479 ZNRF2P3-201ENST00000424200 374 ntBASIC19.22■□□□□ 0.67
PDLIM4P50479 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
PDLIM4P50479 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM4P50479 AL031432.3-201ENST00000607698 485 ntBASIC19.22■□□□□ 0.67
PDLIM4P50479 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM4P50479 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM4P50479 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM4P50479 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM4P50479 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM4P50479 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM4P50479 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM4P50479 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PDLIM4P50479 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PDLIM4P50479 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM4P50479 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM4P50479 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.21■□□□□ 0.67
PDLIM4P50479 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM4P50479 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.21■□□□□ 0.67
PDLIM4P50479 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.21■□□□□ 0.67
PDLIM4P50479 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.21■□□□□ 0.67
PDLIM4P50479 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.21■□□□□ 0.67
PDLIM4P50479 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PDLIM4P50479 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms