Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SOX9P48436 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.38■■□□□ 1.33
SOX9P48436 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SOX9P48436 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
SOX9P48436 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
SOX9P48436 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
SOX9P48436 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
SOX9P48436 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
SOX9P48436 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SOX9P48436 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
SOX9P48436 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SOX9P48436 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.37■■□□□ 1.33
SOX9P48436 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.37■■□□□ 1.33
SOX9P48436 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.37■■□□□ 1.33
SOX9P48436 AC136469.2-201ENST00000623944 1028 ntBASIC23.37■■□□□ 1.33
SOX9P48436 DUSP8P4-201ENST00000399538 1761 ntBASIC23.37■■□□□ 1.33
SOX9P48436 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
SOX9P48436 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
SOX9P48436 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.36■■□□□ 1.33
SOX9P48436 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SOX9P48436 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SOX9P48436 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.36■■□□□ 1.33
SOX9P48436 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.36■■□□□ 1.33
SOX9P48436 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.36■■□□□ 1.33
SOX9P48436 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SOX9P48436 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SOX9P48436 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SOX9P48436 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SOX9P48436 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SOX9P48436 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SOX9P48436 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
SOX9P48436 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.35■■□□□ 1.33
SOX9P48436 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SOX9P48436 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.35■■□□□ 1.33
SOX9P48436 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.35■■□□□ 1.33
SOX9P48436 AC009086.3-201ENST00000623486 1008 ntBASIC23.35■■□□□ 1.33
SOX9P48436 AC241377.3-202ENST00000626088 1088 ntBASIC23.35■■□□□ 1.33
SOX9P48436 AC241585.3-202ENST00000628937 1088 ntBASIC23.35■■□□□ 1.33
SOX9P48436 AC245100.8-202ENST00000629247 1058 ntBASIC23.35■■□□□ 1.33
SOX9P48436 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SOX9P48436 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
SOX9P48436 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SOX9P48436 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
SOX9P48436 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SOX9P48436 MIR3181-201ENST00000578512 73 ntBASIC23.34■■□□□ 1.33
SOX9P48436 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
SOX9P48436 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SOX9P48436 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
SOX9P48436 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SOX9P48436 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SOX9P48436 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.33■■□□□ 1.33
SOX9P48436 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.33■■□□□ 1.33
SOX9P48436 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.33■■□□□ 1.33
SOX9P48436 AC135731.1-201ENST00000569415 2548 ntBASIC23.33■■□□□ 1.33
SOX9P48436 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.33■■□□□ 1.32
SOX9P48436 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
SOX9P48436 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.33■■□□□ 1.32
SOX9P48436 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.33■■□□□ 1.32
SOX9P48436 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.32■■□□□ 1.32
SOX9P48436 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.32■■□□□ 1.32
SOX9P48436 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SOX9P48436 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
SOX9P48436 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.32■■□□□ 1.32
SOX9P48436 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SOX9P48436 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
SOX9P48436 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.32■■□□□ 1.32
SOX9P48436 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SOX9P48436 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SOX9P48436 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.32■■□□□ 1.32
SOX9P48436 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SOX9P48436 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.31■■□□□ 1.32
SOX9P48436 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.31■■□□□ 1.32
SOX9P48436 AC233992.3-201ENST00000607491 485 ntBASIC23.31■■□□□ 1.32
SOX9P48436 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SOX9P48436 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
SOX9P48436 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SOX9P48436 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SOX9P48436 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.31■■□□□ 1.32
SOX9P48436 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SOX9P48436 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SOX9P48436 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.3■■□□□ 1.32
SOX9P48436 AC091060.1-201ENST00000623524 1766 ntBASIC23.3■■□□□ 1.32
SOX9P48436 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SOX9P48436 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.3■■□□□ 1.32
SOX9P48436 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SOX9P48436 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
SOX9P48436 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SOX9P48436 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.3■■□□□ 1.32
SOX9P48436 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.3■■□□□ 1.32
SOX9P48436 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.29■■□□□ 1.32
SOX9P48436 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SOX9P48436 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SOX9P48436 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SOX9P48436 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SOX9P48436 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.29■■□□□ 1.32
SOX9P48436 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.29■■□□□ 1.32
SOX9P48436 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.29■■□□□ 1.32
SOX9P48436 SP2-202ENST00000613139 908 ntTSL 5 BASIC23.29■■□□□ 1.32
SOX9P48436 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
SOX9P48436 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms