Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RFX3P48380 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RFX3P48380 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.26■□□□□ 0.99
RFX3P48380 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.26■□□□□ 0.99
RFX3P48380 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.26■□□□□ 0.99
RFX3P48380 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX3P48380 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX3P48380 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RFX3P48380 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.26■□□□□ 0.99
RFX3P48380 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
RFX3P48380 AC131274.2-201ENST00000580697 1507 ntBASIC21.25■□□□□ 0.99
RFX3P48380 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.25■□□□□ 0.99
RFX3P48380 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.25■□□□□ 0.99
RFX3P48380 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
RFX3P48380 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX3P48380 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX3P48380 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RFX3P48380 BX664725.1-201ENST00000438252 379 ntBASIC21.25■□□□□ 0.99
RFX3P48380 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX3P48380 AL451085.2-201ENST00000605085 799 ntBASIC21.25■□□□□ 0.99
RFX3P48380 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.25■□□□□ 0.99
RFX3P48380 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RFX3P48380 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.25■□□□□ 0.99
RFX3P48380 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RFX3P48380 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.24■□□□□ 0.99
RFX3P48380 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.24■□□□□ 0.99
RFX3P48380 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RFX3P48380 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RFX3P48380 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RFX3P48380 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RFX3P48380 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RFX3P48380 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX3P48380 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.23■□□□□ 0.99
RFX3P48380 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
RFX3P48380 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX3P48380 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX3P48380 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.23■□□□□ 0.99
RFX3P48380 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RFX3P48380 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.23■□□□□ 0.99
RFX3P48380 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
RFX3P48380 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.22■□□□□ 0.99
RFX3P48380 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.22■□□□□ 0.99
RFX3P48380 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.22■□□□□ 0.99
RFX3P48380 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
RFX3P48380 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.22■□□□□ 0.99
RFX3P48380 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
RFX3P48380 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.22■□□□□ 0.99
RFX3P48380 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.22■□□□□ 0.99
RFX3P48380 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.22■□□□□ 0.99
RFX3P48380 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX3P48380 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX3P48380 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
RFX3P48380 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RFX3P48380 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RFX3P48380 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX3P48380 AC009299.2-201ENST00000482477 511 ntBASIC21.21■□□□□ 0.99
RFX3P48380 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.21■□□□□ 0.99
RFX3P48380 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX3P48380 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RFX3P48380 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX3P48380 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.2■□□□□ 0.98
RFX3P48380 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX3P48380 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX3P48380 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
RFX3P48380 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX3P48380 AC137630.3-201ENST00000607245 391 ntBASIC21.2■□□□□ 0.98
RFX3P48380 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX3P48380 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX3P48380 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX3P48380 AC012676.1-201ENST00000574705 1949 ntBASIC21.19■□□□□ 0.98
RFX3P48380 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.19■□□□□ 0.98
RFX3P48380 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RFX3P48380 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RFX3P48380 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RFX3P48380 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX3P48380 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
RFX3P48380 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.19■□□□□ 0.98
RFX3P48380 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.19■□□□□ 0.98
RFX3P48380 KRT125P-201ENST00000546827 989 ntBASIC21.19■□□□□ 0.98
RFX3P48380 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.19■□□□□ 0.98
RFX3P48380 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX3P48380 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX3P48380 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX3P48380 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RFX3P48380 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX3P48380 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
RFX3P48380 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RFX3P48380 AC133561.1-201ENST00000568600 2415 ntBASIC21.18■□□□□ 0.98
RFX3P48380 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RFX3P48380 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.18■□□□□ 0.98
RFX3P48380 AC239859.2-201ENST00000444165 318 ntBASIC21.18■□□□□ 0.98
RFX3P48380 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.18■□□□□ 0.98
RFX3P48380 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.18■□□□□ 0.98
RFX3P48380 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms