Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL8A1P27658 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL8A1P27658 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL8A1P27658 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20■□□□□ 0.79
COL8A1P27658 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
COL8A1P27658 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL8A1P27658 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL8A1P27658 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL8A1P27658 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.99■□□□□ 0.79
COL8A1P27658 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL8A1P27658 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.99■□□□□ 0.79
COL8A1P27658 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
COL8A1P27658 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL8A1P27658 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.99■□□□□ 0.79
COL8A1P27658 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL8A1P27658 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL8A1P27658 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.98■□□□□ 0.79
COL8A1P27658 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.98■□□□□ 0.79
COL8A1P27658 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
COL8A1P27658 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL8A1P27658 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL8A1P27658 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.98■□□□□ 0.79
COL8A1P27658 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.98■□□□□ 0.79
COL8A1P27658 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL8A1P27658 AL358852.1-201ENST00000623174 1268 ntBASIC19.98■□□□□ 0.79
COL8A1P27658 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL8A1P27658 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.98■□□□□ 0.79
COL8A1P27658 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL8A1P27658 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL8A1P27658 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.97■□□□□ 0.79
COL8A1P27658 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.97■□□□□ 0.79
COL8A1P27658 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL8A1P27658 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.97■□□□□ 0.79
COL8A1P27658 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.97■□□□□ 0.79
COL8A1P27658 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
COL8A1P27658 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.97■□□□□ 0.79
COL8A1P27658 KRT18P14-201ENST00000534205 1250 ntBASIC19.97■□□□□ 0.79
COL8A1P27658 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
COL8A1P27658 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL8A1P27658 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL8A1P27658 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL8A1P27658 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL8A1P27658 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL8A1P27658 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL8A1P27658 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL8A1P27658 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL8A1P27658 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL8A1P27658 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.96■□□□□ 0.79
COL8A1P27658 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.96■□□□□ 0.79
COL8A1P27658 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.96■□□□□ 0.79
COL8A1P27658 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.96■□□□□ 0.79
COL8A1P27658 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
COL8A1P27658 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.96■□□□□ 0.79
COL8A1P27658 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL8A1P27658 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.95■□□□□ 0.78
COL8A1P27658 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
COL8A1P27658 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL8A1P27658 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
COL8A1P27658 C17orf82-201ENST00000623772 1530 ntBASIC19.94■□□□□ 0.78
COL8A1P27658 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
COL8A1P27658 AL355802.2-201ENST00000402069 882 ntBASIC19.94■□□□□ 0.78
COL8A1P27658 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
COL8A1P27658 AC104771.1-201ENST00000603335 964 ntBASIC19.94■□□□□ 0.78
COL8A1P27658 AC241377.3-202ENST00000626088 1088 ntBASIC19.94■□□□□ 0.78
COL8A1P27658 AC241585.3-202ENST00000628937 1088 ntBASIC19.94■□□□□ 0.78
COL8A1P27658 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.94■□□□□ 0.78
COL8A1P27658 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL8A1P27658 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL8A1P27658 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL8A1P27658 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.93■□□□□ 0.78
COL8A1P27658 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL8A1P27658 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.93■□□□□ 0.78
COL8A1P27658 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.93■□□□□ 0.78
COL8A1P27658 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.93■□□□□ 0.78
COL8A1P27658 AC009086.3-201ENST00000623486 1008 ntBASIC19.93■□□□□ 0.78
COL8A1P27658 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL8A1P27658 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
COL8A1P27658 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.93■□□□□ 0.78
COL8A1P27658 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
COL8A1P27658 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
COL8A1P27658 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.92■□□□□ 0.78
COL8A1P27658 CDCA4P2-201ENST00000441182 718 ntBASIC19.92■□□□□ 0.78
COL8A1P27658 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.92■□□□□ 0.78
COL8A1P27658 AC012414.1-201ENST00000556676 535 ntBASIC19.92■□□□□ 0.78
COL8A1P27658 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.92■□□□□ 0.78
COL8A1P27658 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms