Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC27.77■■■□□ 2.04
COL1A1P02452 AC105265.2-201ENST00000467189 838 ntBASIC27.76■■■□□ 2.04
COL1A1P02452 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
COL1A1P02452 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
COL1A1P02452 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
COL1A1P02452 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
COL1A1P02452 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
COL1A1P02452 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
COL1A1P02452 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
COL1A1P02452 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC27.76■■■□□ 2.03
COL1A1P02452 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
COL1A1P02452 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC27.76■■■□□ 2.03
COL1A1P02452 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC27.76■■■□□ 2.03
COL1A1P02452 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
COL1A1P02452 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL1A1P02452 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC27.75■■■□□ 2.03
COL1A1P02452 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL1A1P02452 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL1A1P02452 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL1A1P02452 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL1A1P02452 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC27.75■■■□□ 2.03
COL1A1P02452 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL1A1P02452 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
COL1A1P02452 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC27.74■■■□□ 2.03
COL1A1P02452 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27.74■■■□□ 2.03
COL1A1P02452 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC27.74■■■□□ 2.03
COL1A1P02452 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
COL1A1P02452 MIR939-201ENST00000401314 82 ntBASIC27.74■■■□□ 2.03
COL1A1P02452 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
COL1A1P02452 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC27.74■■■□□ 2.03
COL1A1P02452 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC27.74■■■□□ 2.03
COL1A1P02452 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC27.74■■■□□ 2.03
COL1A1P02452 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC27.74■■■□□ 2.03
COL1A1P02452 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
COL1A1P02452 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC27.73■■■□□ 2.03
COL1A1P02452 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC27.73■■■□□ 2.03
COL1A1P02452 AP001330.3-201ENST00000520123 633 ntBASIC27.73■■■□□ 2.03
COL1A1P02452 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC27.73■■■□□ 2.03
COL1A1P02452 DUX4L19-201ENST00000557448 1267 ntBASIC27.73■■■□□ 2.03
COL1A1P02452 AF213884.3-201ENST00000563833 479 ntBASIC27.73■■■□□ 2.03
COL1A1P02452 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC27.73■■■□□ 2.03
COL1A1P02452 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC27.73■■■□□ 2.03
COL1A1P02452 AC135731.1-201ENST00000569415 2548 ntBASIC27.73■■■□□ 2.03
COL1A1P02452 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
COL1A1P02452 SHF-207ENST00000560540 2062 ntTSL 5 BASIC27.73■■■□□ 2.03
COL1A1P02452 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
COL1A1P02452 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
COL1A1P02452 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.72■■■□□ 2.03
COL1A1P02452 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC27.72■■■□□ 2.03
COL1A1P02452 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
COL1A1P02452 C17orf82-201ENST00000623772 1530 ntBASIC27.72■■■□□ 2.03
COL1A1P02452 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC27.72■■■□□ 2.03
COL1A1P02452 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
COL1A1P02452 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
COL1A1P02452 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC27.71■■■□□ 2.03
COL1A1P02452 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC27.71■■■□□ 2.03
COL1A1P02452 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.71■■■□□ 2.03
COL1A1P02452 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
COL1A1P02452 USF2-207ENST00000595068 1612 ntTSL 5 BASIC27.71■■■□□ 2.03
COL1A1P02452 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC27.7■■■□□ 2.03
COL1A1P02452 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC27.7■■■□□ 2.03
COL1A1P02452 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.03
COL1A1P02452 AC020928.2-201ENST00000588717 2197 ntBASIC27.7■■■□□ 2.03
COL1A1P02452 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.7■■■□□ 2.02
COL1A1P02452 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
COL1A1P02452 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
COL1A1P02452 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC27.7■■■□□ 2.02
COL1A1P02452 GRAMD4P4-201ENST00000613563 1115 ntBASIC27.7■■■□□ 2.02
COL1A1P02452 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL1A1P02452 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.69■■■□□ 2.02
COL1A1P02452 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC27.69■■■□□ 2.02
COL1A1P02452 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL1A1P02452 AL136967.2-201ENST00000623968 743 ntBASIC27.69■■■□□ 2.02
COL1A1P02452 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL1A1P02452 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC27.68■■■□□ 2.02
COL1A1P02452 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
COL1A1P02452 AC142381.3-201ENST00000568208 1670 ntBASIC27.68■■■□□ 2.02
COL1A1P02452 AL161729.1-201ENST00000604104 1402 ntBASIC27.68■■■□□ 2.02
COL1A1P02452 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL1A1P02452 AP003733.4-201ENST00000623785 1697 ntBASIC27.67■■■□□ 2.02
COL1A1P02452 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL1A1P02452 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL1A1P02452 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
COL1A1P02452 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
COL1A1P02452 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
COL1A1P02452 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
COL1A1P02452 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL1A1P02452 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC27.66■■■□□ 2.02
COL1A1P02452 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
COL1A1P02452 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL1A1P02452 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL1A1P02452 HYI-206ENST00000372434 1025 ntTSL 5 BASIC27.66■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms