Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 NTF6A-201ENST00000591175 560 ntBASIC21.62■■□□□ 1.05
CPSF4O95639 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CPSF4O95639 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CPSF4O95639 ANOS2P-203ENST00000472227 1816 ntBASIC21.62■■□□□ 1.05
CPSF4O95639 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPSF4O95639 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPSF4O95639 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPSF4O95639 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPSF4O95639 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPSF4O95639 BHLHE23-202ENST00000612929 1109 ntBASIC21.61■■□□□ 1.05
CPSF4O95639 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPSF4O95639 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CPSF4O95639 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.61■■□□□ 1.05
CPSF4O95639 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.61■■□□□ 1.05
CPSF4O95639 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPSF4O95639 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPSF4O95639 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.6■■□□□ 1.05
CPSF4O95639 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CPSF4O95639 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPSF4O95639 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPSF4O95639 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPSF4O95639 AC011551.1-201ENST00000614101 683 ntBASIC21.6■■□□□ 1.05
CPSF4O95639 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPSF4O95639 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.6■■□□□ 1.05
CPSF4O95639 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CPSF4O95639 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CPSF4O95639 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.59■■□□□ 1.05
CPSF4O95639 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CPSF4O95639 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CPSF4O95639 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.59■■□□□ 1.05
CPSF4O95639 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CPSF4O95639 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.59■■□□□ 1.05
CPSF4O95639 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CPSF4O95639 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
CPSF4O95639 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CPSF4O95639 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CPSF4O95639 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CPSF4O95639 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.58■■□□□ 1.05
CPSF4O95639 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.58■■□□□ 1.05
CPSF4O95639 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.58■■□□□ 1.05
CPSF4O95639 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.58■■□□□ 1.04
CPSF4O95639 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CPSF4O95639 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.58■■□□□ 1.04
CPSF4O95639 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CPSF4O95639 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
CPSF4O95639 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4O95639 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.57■■□□□ 1.04
CPSF4O95639 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4O95639 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4O95639 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.57■■□□□ 1.04
CPSF4O95639 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4O95639 AC131274.2-201ENST00000580697 1507 ntBASIC21.56■■□□□ 1.04
CPSF4O95639 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CPSF4O95639 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4O95639 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.56■■□□□ 1.04
CPSF4O95639 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.56■■□□□ 1.04
CPSF4O95639 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.56■■□□□ 1.04
CPSF4O95639 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4O95639 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4O95639 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CPSF4O95639 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 AC004987.1-201ENST00000428627 508 ntBASIC21.55■■□□□ 1.04
CPSF4O95639 AC022616.5-201ENST00000518796 181 ntBASIC21.55■■□□□ 1.04
CPSF4O95639 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.55■■□□□ 1.04
CPSF4O95639 AC019171.1-201ENST00000601251 1056 ntBASIC21.55■■□□□ 1.04
CPSF4O95639 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.55■■□□□ 1.04
CPSF4O95639 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4O95639 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4O95639 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4O95639 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.54■■□□□ 1.04
CPSF4O95639 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4O95639 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4O95639 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4O95639 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.54■■□□□ 1.04
CPSF4O95639 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4O95639 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4O95639 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CPSF4O95639 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4O95639 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4O95639 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4O95639 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.53■■□□□ 1.04
CPSF4O95639 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4O95639 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CPSF4O95639 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.53■■□□□ 1.04
CPSF4O95639 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CPSF4O95639 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4O95639 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4O95639 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms