Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.42■■□□□ 1.02
TCRBV3S1A0A5B6 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
TCRBV3S1A0A5B6 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
TCRBV3S1A0A5B6 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.42■■□□□ 1.02
TCRBV3S1A0A5B6 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 AC060814.1-201ENST00000554326 538 ntBASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TCRBV3S1A0A5B6 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TCRBV3S1A0A5B6 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TCRBV3S1A0A5B6 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TCRBV3S1A0A5B6 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.39■■□□□ 1.02
TCRBV3S1A0A5B6 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.39■■□□□ 1.02
TCRBV3S1A0A5B6 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 KRT18P10-201ENST00000388836 1287 ntBASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 ESRRAP2-201ENST00000418437 1549 ntBASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.39■■□□□ 1.01
TCRBV3S1A0A5B6 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 RP9P-202ENST00000450133 1212 ntBASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.38■■□□□ 1.01
TCRBV3S1A0A5B6 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TCRBV3S1A0A5B6 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.36■■□□□ 1.01
TCRBV3S1A0A5B6 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 AC092296.2-201ENST00000589470 999 ntBASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.35■■□□□ 1.01
TCRBV3S1A0A5B6 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 ZNRF2P2-203ENST00000454624 420 ntBASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 AC093536.1-201ENST00000569153 554 ntBASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV3S1A0A5B6 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TCRBV3S1A0A5B6 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms