Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AC134312.5-201ENST00000568031 1313 ntBASIC11.95□□□□□ -0.5
FOXA2Q9Y261 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 ACTBP8-201ENST00000403258 1108 ntBASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AC005034.1-201ENST00000426657 489 ntBASIC11.95□□□□□ -0.5
FOXA2Q9Y261 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 EIF3FP3-201ENST00000434851 1086 ntBASIC11.95□□□□□ -0.5
FOXA2Q9Y261 PNKD-204ENST00000436005 978 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 GAPDHP21-201ENST00000450301 1010 ntBASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 FUZ-207ENST00000526575 482 ntTSL 4 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 IGHV3-72-202ENST00000621503 303 ntBASIC11.95□□□□□ -0.5
FOXA2Q9Y261 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 KRT8P24-201ENST00000560290 1559 ntBASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA2Q9Y261 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 MRPL37P1-201ENST00000592451 1337 ntBASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 RPL28-203ENST00000428193 573 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 RPL28-204ENST00000431533 590 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 KRT43P-201ENST00000434019 910 ntBASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms