Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 SOCS2P1-201ENST00000417727 557 ntBASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 MYCLP2-201ENST00000449268 967 ntBASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 INVS-201ENST00000262456 2968 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC39Q9UFE4 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 AP001582.1-201ENST00000525856 295 ntBASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 AL359711.2-201ENST00000563105 872 ntBASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 AC124283.3-201ENST00000570869 594 ntBASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 RN7SL204P-201ENST00000582831 262 ntBASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 CHCHD2P3-201ENST00000603038 451 ntBASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 AC133539.2-201ENST00000604757 467 ntBASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 TET3-201ENST00000305799 5174 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC39Q9UFE4 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 AC236430.1-201ENST00000402231 743 ntBASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 HLA-K-203ENST00000430151 1046 ntBASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 SPDYE22P-201ENST00000582158 798 ntBASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 PRSS30P-206ENST00000641773 873 ntBASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms