Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 TSEN15P1-201ENST00000423257 515 ntBASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AP000347.1-202ENST00000435868 847 ntBASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 KLF2P3-201ENST00000451977 1087 ntBASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC109322.1-201ENST00000524499 1264 ntBASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC044860.1-202ENST00000559481 777 ntBASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC025678.2-201ENST00000562061 970 ntBASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC134684.3-201ENST00000641758 218 ntBASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHMP1AQ9HD42 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 HLCS-207ENST00000612277 6112 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 TP73-203ENST00000357733 4899 ntTSL 5 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AP006288.1-201ENST00000446065 395 ntBASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AC004967.1-201ENST00000453589 447 ntBASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms