Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
VRK1Q99986 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 DMBT1P1-203ENST00000636837 4628 ntBASIC13.13□□□□□ -0.31
VRK1Q99986 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.13□□□□□ -0.31
VRK1Q99986 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.13□□□□□ -0.31
VRK1Q99986 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
VRK1Q99986 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.13□□□□□ -0.31
VRK1Q99986 RPL7P3-201ENST00000441388 714 ntBASIC13.13□□□□□ -0.31
VRK1Q99986 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.13□□□□□ -0.31
VRK1Q99986 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.13□□□□□ -0.31
VRK1Q99986 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.13□□□□□ -0.31
VRK1Q99986 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.13□□□□□ -0.31
VRK1Q99986 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
VRK1Q99986 AP005019.2-201ENST00000615104 511 ntBASIC13.13□□□□□ -0.31
VRK1Q99986 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.13□□□□□ -0.31
VRK1Q99986 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 AC127383.1-201ENST00000444697 1800 ntBASIC13.13□□□□□ -0.31
VRK1Q99986 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
VRK1Q99986 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
VRK1Q99986 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.13□□□□□ -0.31
VRK1Q99986 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
VRK1Q99986 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
VRK1Q99986 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
VRK1Q99986 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
VRK1Q99986 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
VRK1Q99986 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.12□□□□□ -0.31
VRK1Q99986 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.12□□□□□ -0.31
VRK1Q99986 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.12□□□□□ -0.31
VRK1Q99986 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
VRK1Q99986 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 WASH3P-207ENST00000560956 1394 ntBASIC13.12□□□□□ -0.31
VRK1Q99986 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.12□□□□□ -0.31
VRK1Q99986 AC092933.1-201ENST00000393644 945 ntBASIC13.12□□□□□ -0.31
VRK1Q99986 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.12□□□□□ -0.31
VRK1Q99986 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.12□□□□□ -0.31
VRK1Q99986 FAM21FP-201ENST00000426241 1131 ntBASIC13.12□□□□□ -0.31
VRK1Q99986 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.12□□□□□ -0.31
VRK1Q99986 AC022137.2-201ENST00000503482 481 ntBASIC13.12□□□□□ -0.31
VRK1Q99986 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.12□□□□□ -0.31
VRK1Q99986 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.12□□□□□ -0.31
VRK1Q99986 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.12□□□□□ -0.31
VRK1Q99986 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
VRK1Q99986 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.12□□□□□ -0.31
VRK1Q99986 RN7SL219P-201ENST00000582872 296 ntBASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms