Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 AC023794.5-201ENST00000564380 2157 ntBASIC13.13□□□□□ -0.31
RFT1Q96AA3 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 AC092580.3-201ENST00000430932 139 ntBASIC13.13□□□□□ -0.31
RFT1Q96AA3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 TIMM17BP1-201ENST00000545713 516 ntBASIC13.13□□□□□ -0.31
RFT1Q96AA3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 AC140878.1-201ENST00000565277 250 ntBASIC13.13□□□□□ -0.31
RFT1Q96AA3 AL844908.2-201ENST00000609461 460 ntBASIC13.13□□□□□ -0.31
RFT1Q96AA3 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RFT1Q96AA3 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RFT1Q96AA3 AC004899.2-201ENST00000622993 3860 ntBASIC13.13□□□□□ -0.31
RFT1Q96AA3 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 LILRP1-201ENST00000444199 1370 ntBASIC13.12□□□□□ -0.31
RFT1Q96AA3 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 FAM86GP-201ENST00000448322 971 ntBASIC13.12□□□□□ -0.31
RFT1Q96AA3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC097493.3-201ENST00000509725 367 ntBASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 SAMD11P1-201ENST00000571429 661 ntBASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 AC004461.2-201ENST00000629517 803 ntBASIC13.12□□□□□ -0.31
RFT1Q96AA3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.12□□□□□ -0.31
RFT1Q96AA3 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RFT1Q96AA3 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms