Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 CHCHD2P9-201ENST00000461726 456 ntBASIC18.1■□□□□ 0.49
SYNE4Q8N205 RPL18AP3-201ENST00000462885 528 ntBASIC18.1■□□□□ 0.49
SYNE4Q8N205 AL157792.1-201ENST00000488281 530 ntBASIC18.1■□□□□ 0.49
SYNE4Q8N205 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 AC093752.3-201ENST00000567343 901 ntBASIC18.1■□□□□ 0.49
SYNE4Q8N205 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 AC005041.3-201ENST00000606287 649 ntBASIC18.1■□□□□ 0.49
SYNE4Q8N205 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE4Q8N205 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SYNE4Q8N205 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 AC114947.1-202ENST00000514136 344 ntBASIC18.09■□□□□ 0.49
SYNE4Q8N205 NEU3-207ENST00000534628 746 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 AC005618.3-201ENST00000624928 458 ntBASIC18.09■□□□□ 0.49
SYNE4Q8N205 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 CICP14-201ENST00000629111 2732 ntBASIC18.09■□□□□ 0.49
SYNE4Q8N205 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 BRD7P5-201ENST00000299197 1822 ntBASIC18.09■□□□□ 0.49
SYNE4Q8N205 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE4Q8N205 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SYNE4Q8N205 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC18.08■□□□□ 0.49
SYNE4Q8N205 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE4Q8N205 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SYNE4Q8N205 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SYNE4Q8N205 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC18.08■□□□□ 0.48
SYNE4Q8N205 TMCO5B-205ENST00000530020 894 ntBASIC18.08■□□□□ 0.48
SYNE4Q8N205 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.08■□□□□ 0.48
SYNE4Q8N205 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.08■□□□□ 0.48
SYNE4Q8N205 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.08■□□□□ 0.48
SYNE4Q8N205 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SYNE4Q8N205 AC027237.1-201ENST00000560942 655 ntBASIC18.08■□□□□ 0.48
SYNE4Q8N205 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.08■□□□□ 0.48
SYNE4Q8N205 AC087392.5-201ENST00000612517 489 ntBASIC18.08■□□□□ 0.48
SYNE4Q8N205 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SYNE4Q8N205 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SYNE4Q8N205 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
SYNE4Q8N205 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SYNE4Q8N205 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SYNE4Q8N205 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SYNE4Q8N205 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC18.07■□□□□ 0.48
SYNE4Q8N205 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SYNE4Q8N205 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms