Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CICP23-201ENST00000605013 2741 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 BX679664.3-201ENST00000414070 555 ntBASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AC113935.1-201ENST00000471722 555 ntBASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 F11R-204ENST00000537746 1245 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP3Q7Z494 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 OR7E115P-201ENST00000382617 1024 ntBASIC19.54■□□□□ 0.72
NPHP3Q7Z494 AL512599.1-201ENST00000430724 685 ntBASIC19.54■□□□□ 0.72
NPHP3Q7Z494 ASS1P2-201ENST00000439895 1223 ntBASIC19.54■□□□□ 0.72
NPHP3Q7Z494 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 KNOP1P1-201ENST00000542108 989 ntBASIC19.54■□□□□ 0.72
NPHP3Q7Z494 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC19.54■□□□□ 0.72
NPHP3Q7Z494 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 OR52M2P-201ENST00000414298 959 ntBASIC19.53■□□□□ 0.72
NPHP3Q7Z494 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 RN7SL288P-201ENST00000490496 291 ntBASIC19.53■□□□□ 0.72
NPHP3Q7Z494 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 AC091769.1-201ENST00000619576 568 ntBASIC19.53■□□□□ 0.72
NPHP3Q7Z494 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms