Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC003686.1-201ENST00000550956 1034 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 MIR5572-201ENST00000583188 137 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC009093.10-201ENST00000641956 1442 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC018529.2-202ENST00000611482 3087 ntBASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 TCAF2P1-201ENST00000291129 2421 ntBASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 AC018442.1-201ENST00000421439 2061 ntBASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 OR2R1P-201ENST00000441404 914 ntBASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 FGFR3P1-201ENST00000449999 601 ntBASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 MIR6769A-201ENST00000617340 73 ntBASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNFT1Q5M7Z0 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.21□□□□□ -0.3
RNFT1Q5M7Z0 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 CAP2P1-201ENST00000557743 1390 ntBASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 FRMPD2B-201ENST00000431305 1347 ntBASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNFT1Q5M7Z0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms