Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN6P56747 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 RNA5SP359-201ENST00000364838 113 ntBASIC14.1□□□□□ -0.15
CLDN6P56747 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CLDN6P56747 MIR557-201ENST00000385239 98 ntBASIC14.1□□□□□ -0.15
CLDN6P56747 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC14.1□□□□□ -0.15
CLDN6P56747 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CLDN6P56747 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CLDN6P56747 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN6P56747 AC010234.1-201ENST00000494599 870 ntBASIC14.1□□□□□ -0.15
CLDN6P56747 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.1□□□□□ -0.15
CLDN6P56747 MRPL22P1-201ENST00000505398 616 ntBASIC14.1□□□□□ -0.15
CLDN6P56747 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.1□□□□□ -0.15
CLDN6P56747 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.1□□□□□ -0.15
CLDN6P56747 AC025262.2-201ENST00000623975 1056 ntBASIC14.1□□□□□ -0.15
CLDN6P56747 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN6P56747 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLDN6P56747 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.1□□□□□ -0.15
CLDN6P56747 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CLDN6P56747 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC14.1□□□□□ -0.15
CLDN6P56747 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLDN6P56747 AP002414.2-201ENST00000591780 3365 ntBASIC14.09□□□□□ -0.15
CLDN6P56747 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.09□□□□□ -0.15
CLDN6P56747 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLDN6P56747 AC007292.2-201ENST00000593524 1812 ntBASIC14.09□□□□□ -0.15
CLDN6P56747 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
CLDN6P56747 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
CLDN6P56747 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.09□□□□□ -0.15
CLDN6P56747 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CLDN6P56747 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN6P56747 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 BUD31-205ENST00000456893 512 ntTSL 5 BASIC14.09□□□□□ -0.15
CLDN6P56747 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.09□□□□□ -0.15
CLDN6P56747 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.09□□□□□ -0.15
CLDN6P56747 AC133540.1-201ENST00000620845 1019 ntBASIC14.09□□□□□ -0.15
CLDN6P56747 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.09□□□□□ -0.15
CLDN6P56747 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.09□□□□□ -0.15
CLDN6P56747 TMBIM7P-202ENST00000641474 1516 ntBASIC14.09□□□□□ -0.15
CLDN6P56747 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.09□□□□□ -0.15
CLDN6P56747 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.09□□□□□ -0.15
CLDN6P56747 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CLDN6P56747 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CLDN6P56747 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLDN6P56747 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN6P56747 AC013268.4-201ENST00000637413 2228 ntBASIC14.09□□□□□ -0.15
CLDN6P56747 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLDN6P56747 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.08□□□□□ -0.15
CLDN6P56747 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
CLDN6P56747 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLDN6P56747 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLDN6P56747 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLDN6P56747 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLDN6P56747 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLDN6P56747 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN6P56747 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.08□□□□□ -0.16
CLDN6P56747 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN6P56747 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN6P56747 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms