Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
CDH11P55287 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CDH11P55287 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.58□□□□□ -0.23
CDH11P55287 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CDH11P55287 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CDH11P55287 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
CDH11P55287 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.58□□□□□ -0.23
CDH11P55287 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.58□□□□□ -0.23
CDH11P55287 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.58□□□□□ -0.24
CDH11P55287 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CDH11P55287 KRT8P22-201ENST00000562317 1415 ntBASIC13.58□□□□□ -0.24
CDH11P55287 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CDH11P55287 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CDH11P55287 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.58□□□□□ -0.24
CDH11P55287 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.58□□□□□ -0.24
CDH11P55287 FAM86LP-201ENST00000478302 853 ntBASIC13.58□□□□□ -0.24
CDH11P55287 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.58□□□□□ -0.24
CDH11P55287 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.58□□□□□ -0.24
CDH11P55287 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.58□□□□□ -0.24
CDH11P55287 RAB43P1-201ENST00000561790 589 ntBASIC13.58□□□□□ -0.24
CDH11P55287 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.58□□□□□ -0.24
CDH11P55287 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CDH11P55287 AL162274.1-201ENST00000617191 1098 ntBASIC13.58□□□□□ -0.24
CDH11P55287 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDH11P55287 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CDH11P55287 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CDH11P55287 AC089987.1-201ENST00000551654 2209 ntBASIC13.58□□□□□ -0.24
CDH11P55287 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 AL137784.3-201ENST00000623858 2288 ntBASIC13.57□□□□□ -0.24
CDH11P55287 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.57□□□□□ -0.24
CDH11P55287 AL137783.1-201ENST00000623494 1896 ntBASIC13.57□□□□□ -0.24
CDH11P55287 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CDH11P55287 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
CDH11P55287 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.57□□□□□ -0.24
CDH11P55287 AL442647.2-201ENST00000429864 857 ntBASIC13.57□□□□□ -0.24
CDH11P55287 AL162726.2-201ENST00000438986 1017 ntBASIC13.57□□□□□ -0.24
CDH11P55287 AC234783.1-201ENST00000441761 496 ntBASIC13.57□□□□□ -0.24
CDH11P55287 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.57□□□□□ -0.24
CDH11P55287 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.57□□□□□ -0.24
CDH11P55287 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.57□□□□□ -0.24
CDH11P55287 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.57□□□□□ -0.24
CDH11P55287 KRT17P8-201ENST00000540749 863 ntBASIC13.57□□□□□ -0.24
CDH11P55287 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
CDH11P55287 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
CDH11P55287 AC017083.2-201ENST00000608069 979 ntBASIC13.57□□□□□ -0.24
CDH11P55287 AL391069.4-201ENST00000609583 481 ntBASIC13.57□□□□□ -0.24
CDH11P55287 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
CDH11P55287 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
CDH11P55287 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDH11P55287 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
CDH11P55287 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms