Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC139712.1-201ENST00000378256 1875 ntBASIC18.69■□□□□ 0.58
RXRBP28702 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.69■□□□□ 0.58
RXRBP28702 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
RXRBP28702 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC18.69■□□□□ 0.58
RXRBP28702 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC18.69■□□□□ 0.58
RXRBP28702 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC18.69■□□□□ 0.58
RXRBP28702 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC18.69■□□□□ 0.58
RXRBP28702 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC18.69■□□□□ 0.58
RXRBP28702 AC131235.2-201ENST00000445553 1057 ntBASIC18.69■□□□□ 0.58
RXRBP28702 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC18.69■□□□□ 0.58
RXRBP28702 AC093700.1-201ENST00000503348 717 ntBASIC18.69■□□□□ 0.58
RXRBP28702 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC18.69■□□□□ 0.58
RXRBP28702 AC023051.2-201ENST00000541141 460 ntBASIC18.69■□□□□ 0.58
RXRBP28702 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 AL136298.3-201ENST00000556746 445 ntBASIC18.69■□□□□ 0.58
RXRBP28702 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
RXRBP28702 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC18.69■□□□□ 0.58
RXRBP28702 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC18.69■□□□□ 0.58
RXRBP28702 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC18.69■□□□□ 0.58
RXRBP28702 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC18.69■□□□□ 0.58
RXRBP28702 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 LINC01101-201ENST00000622953 1884 ntBASIC18.69■□□□□ 0.58
RXRBP28702 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC18.69■□□□□ 0.58
RXRBP28702 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.69■□□□□ 0.58
RXRBP28702 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RXRBP28702 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.69■□□□□ 0.58
RXRBP28702 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC18.69■□□□□ 0.58
RXRBP28702 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC18.68■□□□□ 0.58
RXRBP28702 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RXRBP28702 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.68■□□□□ 0.58
RXRBP28702 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
RXRBP28702 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RXRBP28702 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RXRBP28702 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC18.68■□□□□ 0.58
RXRBP28702 AC092865.2-201ENST00000439409 971 ntBASIC18.68■□□□□ 0.58
RXRBP28702 ALDOAP1-201ENST00000491506 1078 ntBASIC18.68■□□□□ 0.58
RXRBP28702 METTL7AP1-201ENST00000547343 496 ntBASIC18.68■□□□□ 0.58
RXRBP28702 RN7SL202P-201ENST00000584410 262 ntBASIC18.68■□□□□ 0.58
RXRBP28702 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC18.68■□□□□ 0.58
RXRBP28702 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC18.68■□□□□ 0.58
RXRBP28702 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RXRBP28702 AC138627.1-201ENST00000641127 1257 ntBASIC18.68■□□□□ 0.58
RXRBP28702 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RXRBP28702 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.68■□□□□ 0.58
RXRBP28702 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RXRBP28702 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RXRBP28702 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RXRBP28702 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 ACTBP14-201ENST00000411655 1089 ntBASIC18.67■□□□□ 0.58
RXRBP28702 DNM1P46-202ENST00000415963 882 ntBASIC18.67■□□□□ 0.58
RXRBP28702 AC092810.2-201ENST00000431570 362 ntBASIC18.67■□□□□ 0.58
RXRBP28702 AL161727.1-201ENST00000457409 530 ntBASIC18.67■□□□□ 0.58
RXRBP28702 RNA5SP288-201ENST00000516075 93 ntBASIC18.67■□□□□ 0.58
RXRBP28702 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC18.67■□□□□ 0.58
RXRBP28702 PCTP-206ENST00000573500 919 ntTSL 3 BASIC18.67■□□□□ 0.58
RXRBP28702 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC18.67■□□□□ 0.58
RXRBP28702 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC18.67■□□□□ 0.58
RXRBP28702 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RXRBP28702 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RXRBP28702 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
RXRBP28702 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms