Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.76□□□□□ -0.21
COL5A1P20908 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC13.76□□□□□ -0.21
COL5A1P20908 NT5C-204ENST00000578337 582 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC13.76□□□□□ -0.21
COL5A1P20908 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 CCT8L1P-201ENST00000465400 1674 ntBASIC13.75□□□□□ -0.21
COL5A1P20908 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
COL5A1P20908 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 DDX39AP1-201ENST00000445147 1181 ntBASIC13.75□□□□□ -0.21
COL5A1P20908 FOXN3-AS2-201ENST00000554071 1262 ntBASIC13.75□□□□□ -0.21
COL5A1P20908 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 AC027139.1-201ENST00000565286 951 ntBASIC13.75□□□□□ -0.21
COL5A1P20908 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 AC064801.2-201ENST00000625052 1303 ntBASIC13.75□□□□□ -0.21
COL5A1P20908 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.75□□□□□ -0.21
COL5A1P20908 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.75□□□□□ -0.21
COL5A1P20908 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL5A1P20908 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.74□□□□□ -0.21
COL5A1P20908 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.74□□□□□ -0.21
COL5A1P20908 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.74□□□□□ -0.21
COL5A1P20908 HINT1-205ENST00000508488 703 ntTSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 F11R-204ENST00000537746 1245 ntTSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC13.74□□□□□ -0.21
COL5A1P20908 AC145285.5-201ENST00000562217 361 ntBASIC13.74□□□□□ -0.21
COL5A1P20908 AC008972.2-201ENST00000606587 494 ntBASIC13.74□□□□□ -0.21
COL5A1P20908 AL021707.6-201ENST00000609212 491 ntBASIC13.74□□□□□ -0.21
COL5A1P20908 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.74□□□□□ -0.21
COL5A1P20908 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.74□□□□□ -0.21
COL5A1P20908 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 AC011270.2-201ENST00000624293 2550 ntBASIC13.74□□□□□ -0.21
COL5A1P20908 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL5A1P20908 RN7SL582P-201ENST00000491078 279 ntBASIC13.74□□□□□ -0.21
COL5A1P20908 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC13.74□□□□□ -0.21
COL5A1P20908 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13.74□□□□□ -0.21
COL5A1P20908 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
COL5A1P20908 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC13.74□□□□□ -0.21
COL5A1P20908 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
COL5A1P20908 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.73□□□□□ -0.21
COL5A1P20908 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
COL5A1P20908 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
COL5A1P20908 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.73□□□□□ -0.21
COL5A1P20908 AC117503.4-201ENST00000623229 1418 ntBASIC13.73□□□□□ -0.21
COL5A1P20908 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
COL5A1P20908 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 AC018529.2-202ENST00000611482 3087 ntBASIC13.73□□□□□ -0.21
COL5A1P20908 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms