Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RCC1-210ENST00000434290 1070 ntTSL 517.05■□□□□ 0.328e-7■□□□□ 9
YBX3P16989 RCC1-206ENST00000419074 997 ntTSL 516.2■□□□□ 0.188e-7■□□□□ 9
YBX3P16989 RCC1-208ENST00000429051 538 ntTSL 315.14■□□□□ 0.018e-7■□□□□ 9
YBX3P16989 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC24.26■■□□□ 1.473e-9■□□□□ 9
YBX3P16989 SPCS1-204ENST00000474945 981 ntTSL 218.05■□□□□ 0.483e-9■□□□□ 9
YBX3P16989 SPCS1-205ENST00000602728 832 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.273e-9■□□□□ 9
YBX3P16989 SPCS1-202ENST00000423431 822 ntTSL 3 BASIC13.2□□□□□ -0.33e-9■□□□□ 9
YBX3P16989 SPCS1-206ENST00000619898 4254 ntTSL 1 (best) BASIC12.53□□□□□ -0.43e-9■□□□□ 9
YBX3P16989 RAC2-202ENST00000401529 569 ntTSL 4 BASIC19.28■□□□□ 0.685e-8■□□□□ 9
YBX3P16989 PRDX2-205ENST00000478908 413 ntTSL 213.86□□□□□ -0.198e-10■□□□□ 9
YBX3P16989 METRN-201ENST00000219542 915 ntAPPRIS ALT2 TSL 233.98■■■■□ 3.039e-7■□□□□ 9
YBX3P16989 METRN-203ENST00000567076 523 ntAPPRIS ALT2 TSL 532.35■■■□□ 2.779e-7■□□□□ 9
YBX3P16989 ORAI2-208ENST00000495936 937 ntTSL 228.85■■■□□ 2.219e-7■□□□□ 9
YBX3P16989 ORAI2-203ENST00000468241 736 ntTSL 227.4■■□□□ 1.989e-7■□□□□ 9
YBX3P16989 METRN-206ENST00000570132 503 ntTSL 327.28■■□□□ 1.969e-7■□□□□ 9
YBX3P16989 MRPL4-206ENST00000590150 747 ntTSL 527.18■■□□□ 1.949e-7■□□□□ 9
YBX3P16989 ARFGAP2-219ENST00000529439 556 ntTSL 525.28■■□□□ 1.649e-7■□□□□ 9
YBX3P16989 ARFGAP2-227ENST00000533243 1558 ntTSL 225.11■■□□□ 1.619e-7■□□□□ 9
YBX3P16989 MRPL4-205ENST00000588963 552 ntTSL 224.65■■□□□ 1.549e-7■□□□□ 9
YBX3P16989 MRPL4-210ENST00000592071 1487 ntTSL 324.64■■□□□ 1.549e-7■□□□□ 9
YBX3P16989 LSM5-204ENST00000409909 740 ntTSL 2 BASIC23.55■■□□□ 1.366e-9■□□□□ 9
YBX3P16989 EPHX2-203ENST00000518328 574 ntTSL 423.21■■□□□ 1.316e-9■□□□□ 9
YBX3P16989 RNF10-219ENST00000543675 583 ntTSL 322.47■■□□□ 1.199e-7■□□□□ 9
YBX3P16989 FAM120AOS-207ENST00000483056 1280 ntTSL 221.98■■□□□ 1.116e-9■□□□□ 9
YBX3P16989 USP15-216ENST00000550632 728 ntTSL 321.83■■□□□ 1.094e-10■□□□□ 9
YBX3P16989 ARFGAP2-212ENST00000527097 942 ntTSL 221.29■■□□□ 19e-7■□□□□ 9
YBX3P16989 SF1-215ENST00000482693 755 ntTSL 221.25■□□□□ 0.991e-8■□□□□ 9
YBX3P16989 EPHX2-208ENST00000521684 935 ntTSL 321.11■□□□□ 0.976e-9■□□□□ 9
YBX3P16989 CAD-205ENST00000458503 806 ntTSL 520.97■□□□□ 0.951e-11■□□□□ 9
YBX3P16989 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC20.59■□□□□ 0.899e-7■□□□□ 9
YBX3P16989 ARFGAP2-204ENST00000524727 995 ntTSL 220.38■□□□□ 0.859e-7■□□□□ 9
YBX3P16989 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.846e-9■□□□□ 9
YBX3P16989 ARFGAP2-220ENST00000529455 840 ntTSL 520.27■□□□□ 0.849e-7■□□□□ 9
YBX3P16989 ORAI2-207ENST00000488996 758 ntTSL 220.21■□□□□ 0.839e-7■□□□□ 9
YBX3P16989 EPHX2-205ENST00000520623 1923 ntTSL 1 (best)19.44■□□□□ 0.76e-9■□□□□ 9
YBX3P16989 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.699e-7■□□□□ 9
YBX3P16989 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.689e-7■□□□□ 9
YBX3P16989 ARFGAP2-209ENST00000526185 1723 ntTSL 219.3■□□□□ 0.689e-7■□□□□ 9
YBX3P16989 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.679e-7■□□□□ 9
YBX3P16989 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC19.22■□□□□ 0.676e-9■□□□□ 9
YBX3P16989 ARFGAP2-222ENST00000530596 534 ntTSL 319.15■□□□□ 0.669e-7■□□□□ 9
YBX3P16989 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.12■□□□□ 0.656e-9■□□□□ 9
YBX3P16989 NCOR2-209ENST00000440187 467 ntTSL 518.88■□□□□ 0.619e-7■□□□□ 9
YBX3P16989 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.76■□□□□ 0.596e-9■□□□□ 9
YBX3P16989 ARFGAP2-217ENST00000528444 730 ntTSL 518.55■□□□□ 0.569e-7■□□□□ 9
YBX3P16989 ARFGAP2-226ENST00000532478 940 ntTSL 518.55■□□□□ 0.569e-7■□□□□ 9
YBX3P16989 ARFGAP2-203ENST00000524586 548 ntTSL 417.94■□□□□ 0.469e-7■□□□□ 9
YBX3P16989 ARFGAP2-207ENST00000525398 1000 ntTSL 317.94■□□□□ 0.469e-7■□□□□ 9
YBX3P16989 ARFGAP2-216ENST00000528072 519 ntTSL 217.8■□□□□ 0.449e-7■□□□□ 9
YBX3P16989 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.319e-7■□□□□ 9
YBX3P16989 ARFGAP2-206ENST00000525314 785 ntTSL 316.67■□□□□ 0.269e-7■□□□□ 9
YBX3P16989 ARFGAP2-224ENST00000531750 649 ntTSL 416.67■□□□□ 0.269e-7■□□□□ 9
YBX3P16989 DPP3-207ENST00000531314 563 ntTSL 416.51■□□□□ 0.236e-9■□□□□ 9
YBX3P16989 LSM5-201ENST00000223084 1295 ntTSL 216.41■□□□□ 0.226e-9■□□□□ 9
YBX3P16989 TIMP1-204ENST00000445623 595 ntTSL 216.21■□□□□ 0.194e-13■□□□□ 9
YBX3P16989 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.02■□□□□ 0.166e-9■□□□□ 9
YBX3P16989 ARFGAP2-201ENST00000395449 1772 ntTSL 515.92■□□□□ 0.149e-7■□□□□ 9
YBX3P16989 DPP3-208ENST00000531354 733 ntTSL 215.81■□□□□ 0.126e-9■□□□□ 9
YBX3P16989 PHB-211ENST00000511933 852 ntTSL 215.53■□□□□ 0.081e-8■□□□□ 9
YBX3P16989 ARFGAP2-225ENST00000532438 740 ntTSL 415.48■□□□□ 0.079e-7■□□□□ 9
YBX3P16989 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.049e-7■□□□□ 9
YBX3P16989 DPP3-210ENST00000532019 561 ntTSL 415.31■□□□□ 0.046e-9■□□□□ 9
YBX3P16989 RNF10-209ENST00000537740 412 ntTSL 215.24■□□□□ 0.039e-7■□□□□ 9
YBX3P16989 ARFGAP2-214ENST00000527927 850 ntTSL 515.08■□□□□ 09e-7■□□□□ 9
YBX3P16989 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -09e-7■□□□□ 9
YBX3P16989 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.016e-9■□□□□ 9
YBX3P16989 ARFGAP2-215ENST00000528041 578 ntTSL 414.67□□□□□ -0.069e-7■□□□□ 9
YBX3P16989 ARFGAP2-218ENST00000528708 550 ntTSL 314.46□□□□□ -0.099e-7■□□□□ 9
YBX3P16989 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.136e-9■□□□□ 9
YBX3P16989 FOXM1-209ENST00000545049 900 ntTSL 214.09□□□□□ -0.159e-7■□□□□ 9
YBX3P16989 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.169e-7■□□□□ 9
YBX3P16989 ARFGAP2-228ENST00000533939 577 ntTSL 314.04□□□□□ -0.169e-7■□□□□ 9
YBX3P16989 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.02□□□□□ -0.169e-7■□□□□ 9
YBX3P16989 HSPH1-206ENST00000602786 3488 ntTSL 1 (best)13.93□□□□□ -0.189e-7■□□□□ 9
YBX3P16989 DPP3-212ENST00000533725 595 ntTSL 413.91□□□□□ -0.186e-9■□□□□ 9
YBX3P16989 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.9□□□□□ -0.186e-9■□□□□ 9
YBX3P16989 DPP3-203ENST00000526515 547 ntTSL 313.88□□□□□ -0.196e-9■□□□□ 9
YBX3P16989 EPHX2-206ENST00000520666 582 ntTSL 413.68□□□□□ -0.226e-9■□□□□ 9
YBX3P16989 ARFGAP2-210ENST00000526342 474 ntTSL 513.59□□□□□ -0.239e-7■□□□□ 9
YBX3P16989 ARFGAP2-221ENST00000529599 555 ntTSL 413.32□□□□□ -0.289e-7■□□□□ 9
YBX3P16989 NOL11-205ENST00000581106 584 ntTSL 313.18□□□□□ -0.39e-7■□□□□ 9
YBX3P16989 PKP4-213ENST00000486254 1566 ntTSL 213.1□□□□□ -0.311e-8■□□□□ 9
YBX3P16989 NOL11-207ENST00000581966 476 ntTSL 513.01□□□□□ -0.339e-7■□□□□ 9
YBX3P16989 CRBN-215ENST00000639284 2223 ntTSL 5 BASIC12.87□□□□□ -0.359e-7■□□□□ 9
YBX3P16989 DPP3-205ENST00000530165 2251 ntTSL 2 BASIC12.77□□□□□ -0.376e-9■□□□□ 9
YBX3P16989 NOL11-211ENST00000584942 552 ntTSL 312.76□□□□□ -0.379e-7■□□□□ 9
YBX3P16989 DPP3-211ENST00000532677 3078 ntTSL 1 (best) BASIC12.71□□□□□ -0.376e-9■□□□□ 9
YBX3P16989 DPP3-206ENST00000531272 572 ntTSL 412.56□□□□□ -0.46e-9■□□□□ 9
YBX3P16989 DPP3-215ENST00000541961 2676 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.46e-9■□□□□ 9
YBX3P16989 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC12.47□□□□□ -0.419e-7■□□□□ 9
YBX3P16989 DPP3-216ENST00000544603 566 ntTSL 512.3□□□□□ -0.446e-9■□□□□ 9
YBX3P16989 ARFGAP2-223ENST00000530794 451 ntTSL 212.04□□□□□ -0.489e-7■□□□□ 9
YBX3P16989 TBC1D23-207ENST00000485687 587 ntTSL 311.9□□□□□ -0.51e-8■□□□□ 9
YBX3P16989 FOXM1-207ENST00000537018 740 ntTSL 511.64□□□□□ -0.559e-7■□□□□ 9
YBX3P16989 FOXM1-208ENST00000538564 693 ntTSL 310.96□□□□□ -0.659e-7■□□□□ 9
YBX3P16989 DROSHA-215ENST00000512076 1124 ntTSL 1 (best)10.84□□□□□ -0.679e-7■□□□□ 9
YBX3P16989 ORAI2-201ENST00000356387 10811 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.689e-7■□□□□ 9
YBX3P16989 ORAI2-210ENST00000611770 10679 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.699e-7■□□□□ 9
YBX3P16989 HSPH1-209ENST00000630972 3570 ntTSL 1 (best) BASIC10.51□□□□□ -0.739e-7■□□□□ 9
YBX3P16989 CRBN-205ENST00000459840 723 ntTSL 210.2□□□□□ -0.789e-7■□□□□ 9
Retrieved 100 of 29,075 protein–RNA pairs in 156.2 ms