Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.73□□□□□ -0.05
COL6A3P12111 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.73□□□□□ -0.05
COL6A3P12111 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.73□□□□□ -0.05
COL6A3P12111 JPT1-205ENST00000470924 663 ntTSL 5 BASIC14.73□□□□□ -0.05
COL6A3P12111 LDHAL6CP-201ENST00000502352 1142 ntBASIC14.73□□□□□ -0.05
COL6A3P12111 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL6A3P12111 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.73□□□□□ -0.05
COL6A3P12111 CCL19-202ENST00000378800 414 ntTSL 2 BASIC14.73□□□□□ -0.05
COL6A3P12111 ABCD1P4-201ENST00000399687 604 ntBASIC14.73□□□□□ -0.05
COL6A3P12111 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC14.73□□□□□ -0.05
COL6A3P12111 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.73□□□□□ -0.05
COL6A3P12111 AL355075.5-201ENST00000553568 890 ntBASIC14.73□□□□□ -0.05
COL6A3P12111 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC14.73□□□□□ -0.05
COL6A3P12111 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC14.73□□□□□ -0.05
COL6A3P12111 AL031768.1-201ENST00000606542 701 ntBASIC14.73□□□□□ -0.05
COL6A3P12111 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
COL6A3P12111 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.73□□□□□ -0.05
COL6A3P12111 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 DBET-201ENST00000630918 3363 ntBASIC14.72□□□□□ -0.05
COL6A3P12111 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
COL6A3P12111 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
COL6A3P12111 ACP1-207ENST00000439645 605 ntTSL 2 BASIC14.72□□□□□ -0.05
COL6A3P12111 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC14.72□□□□□ -0.05
COL6A3P12111 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
COL6A3P12111 AL009176.1-201ENST00000607876 650 ntBASIC14.72□□□□□ -0.05
COL6A3P12111 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
COL6A3P12111 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
COL6A3P12111 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.72□□□□□ -0.05
COL6A3P12111 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
COL6A3P12111 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 AC113398.1-201ENST00000464124 406 ntBASIC14.72□□□□□ -0.05
COL6A3P12111 RN7SL47P-201ENST00000488710 299 ntBASIC14.72□□□□□ -0.05
COL6A3P12111 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC14.72□□□□□ -0.05
COL6A3P12111 SRPK2P-201ENST00000523408 1100 ntBASIC14.72□□□□□ -0.05
COL6A3P12111 DHRS7-202ENST00000536410 1194 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 RN7SL460P-201ENST00000582806 258 ntBASIC14.72□□□□□ -0.05
COL6A3P12111 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
COL6A3P12111 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.72□□□□□ -0.05
COL6A3P12111 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A3P12111 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A3P12111 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A3P12111 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.71□□□□□ -0.05
COL6A3P12111 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A3P12111 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A3P12111 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
COL6A3P12111 SSR4P1-201ENST00000415143 412 ntBASIC14.71□□□□□ -0.05
COL6A3P12111 CLK2P1-201ENST00000416636 1294 ntBASIC14.71□□□□□ -0.05
COL6A3P12111 RBMX2P5-201ENST00000424312 969 ntBASIC14.71□□□□□ -0.05
COL6A3P12111 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC14.71□□□□□ -0.05
COL6A3P12111 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC14.71□□□□□ -0.05
COL6A3P12111 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.71□□□□□ -0.05
COL6A3P12111 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A3P12111 AC090616.6-203ENST00000579186 1945 ntBASIC14.71□□□□□ -0.05
COL6A3P12111 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.71□□□□□ -0.05
COL6A3P12111 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC14.71□□□□□ -0.05
COL6A3P12111 PDPN-208ENST00000509009 571 ntTSL 4 BASIC14.71□□□□□ -0.05
COL6A3P12111 SEC11A-203ENST00000558134 971 ntTSL 3 BASIC14.71□□□□□ -0.05
COL6A3P12111 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.71□□□□□ -0.05
COL6A3P12111 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A3P12111 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
COL6A3P12111 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
COL6A3P12111 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A3P12111 TUBB8-207ENST00000568866 1367 ntTSL 5 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms