Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A2P12110 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A2P12110 ST20-AS1-201ENST00000560255 4223 ntBASIC14.59□□□□□ -0.07
COL6A2P12110 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A2P12110 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL6A2P12110 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A2P12110 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL6A2P12110 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A2P12110 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 AC093433.1-201ENST00000458048 571 ntBASIC14.59□□□□□ -0.07
COL6A2P12110 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A2P12110 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A2P12110 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A2P12110 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 CLUHP2-201ENST00000426660 1303 ntBASIC14.59□□□□□ -0.07
COL6A2P12110 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A2P12110 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.58□□□□□ -0.07
COL6A2P12110 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
COL6A2P12110 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.58□□□□□ -0.07
COL6A2P12110 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A2P12110 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A2P12110 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A2P12110 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 POM121L8P-201ENST00000417732 1281 ntBASIC14.58□□□□□ -0.08
COL6A2P12110 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.58□□□□□ -0.08
COL6A2P12110 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 POM121L9P-203ENST00000441984 1285 ntBASIC14.58□□□□□ -0.08
COL6A2P12110 INGX-202ENST00000489074 768 ntBASIC14.58□□□□□ -0.08
COL6A2P12110 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.58□□□□□ -0.08
COL6A2P12110 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.58□□□□□ -0.08
COL6A2P12110 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 AC138466.3-201ENST00000619983 221 ntBASIC14.58□□□□□ -0.08
COL6A2P12110 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A2P12110 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
COL6A2P12110 AC089987.1-201ENST00000551654 2209 ntBASIC14.58□□□□□ -0.08
COL6A2P12110 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL6A2P12110 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A2P12110 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A2P12110 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
COL6A2P12110 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL6A2P12110 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms