Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
TPM1P09493 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
TPM1P09493 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TPM1P09493 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
TPM1P09493 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TPM1P09493 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TPM1P09493 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TPM1P09493 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.32■□□□□ 0.2
TPM1P09493 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
TPM1P09493 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TPM1P09493 DRD5P1-201ENST00000456605 1438 ntBASIC16.32■□□□□ 0.2
TPM1P09493 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.32■□□□□ 0.2
TPM1P09493 AC036164.1-201ENST00000570544 333 ntBASIC16.32■□□□□ 0.2
TPM1P09493 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.32■□□□□ 0.2
TPM1P09493 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.32■□□□□ 0.2
TPM1P09493 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC16.32■□□□□ 0.2
TPM1P09493 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TPM1P09493 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TPM1P09493 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 AC020910.6-201ENST00000623084 1459 ntBASIC16.31■□□□□ 0.2
TPM1P09493 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.31■□□□□ 0.2
TPM1P09493 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.31■□□□□ 0.2
TPM1P09493 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 AC004945.1-201ENST00000416738 983 ntBASIC16.31■□□□□ 0.2
TPM1P09493 UPF3AP3-201ENST00000420996 769 ntBASIC16.31■□□□□ 0.2
TPM1P09493 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.31■□□□□ 0.2
TPM1P09493 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.31■□□□□ 0.2
TPM1P09493 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.31■□□□□ 0.2
TPM1P09493 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.31■□□□□ 0.2
TPM1P09493 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
TPM1P09493 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.31■□□□□ 0.2
TPM1P09493 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 MEX3B-202ENST00000558133 4333 ntBASIC16.31■□□□□ 0.2
TPM1P09493 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.31■□□□□ 0.2
TPM1P09493 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TPM1P09493 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TPM1P09493 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms