Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC19■□□□□ 0.63
COL3A1P02461 AL133467.4-201ENST00000602953 725 ntBASIC19■□□□□ 0.63
COL3A1P02461 AC007326.1-201ENST00000604539 458 ntBASIC19■□□□□ 0.63
COL3A1P02461 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19■□□□□ 0.63
COL3A1P02461 AC242376.2-201ENST00000619355 883 ntBASIC19■□□□□ 0.63
COL3A1P02461 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19■□□□□ 0.63
COL3A1P02461 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL3A1P02461 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 DDC-213ENST00000617822 1809 ntTSL 3 BASIC18.99■□□□□ 0.63
COL3A1P02461 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC18.99■□□□□ 0.63
COL3A1P02461 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 HINT2P1-201ENST00000419438 481 ntBASIC18.99■□□□□ 0.63
COL3A1P02461 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL3A1P02461 ALG1L13P-202ENST00000519320 584 ntBASIC18.99■□□□□ 0.63
COL3A1P02461 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.99■□□□□ 0.63
COL3A1P02461 RN7SL665P-201ENST00000578793 300 ntBASIC18.99■□□□□ 0.63
COL3A1P02461 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.99■□□□□ 0.63
COL3A1P02461 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC18.99■□□□□ 0.63
COL3A1P02461 AC025262.2-201ENST00000623975 1056 ntBASIC18.99■□□□□ 0.63
COL3A1P02461 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC18.99■□□□□ 0.63
COL3A1P02461 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
COL3A1P02461 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL3A1P02461 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC18.99■□□□□ 0.63
COL3A1P02461 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC18.99■□□□□ 0.63
COL3A1P02461 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC18.98■□□□□ 0.63
COL3A1P02461 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC18.98■□□□□ 0.63
COL3A1P02461 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.98■□□□□ 0.63
COL3A1P02461 AC026316.1-201ENST00000398900 414 ntBASIC18.98■□□□□ 0.63
COL3A1P02461 GGCT-203ENST00000409144 836 ntTSL 2 BASIC18.98■□□□□ 0.63
COL3A1P02461 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC18.98■□□□□ 0.63
COL3A1P02461 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC18.98■□□□□ 0.63
COL3A1P02461 SKA2-205ENST00000580541 689 ntTSL 3 BASIC18.98■□□□□ 0.63
COL3A1P02461 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.98■□□□□ 0.63
COL3A1P02461 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
COL3A1P02461 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC18.98■□□□□ 0.63
COL3A1P02461 AC090643.2-201ENST00000623442 2029 ntBASIC18.98■□□□□ 0.63
COL3A1P02461 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC18.98■□□□□ 0.63
COL3A1P02461 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL3A1P02461 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.97■□□□□ 0.63
COL3A1P02461 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC18.97■□□□□ 0.63
COL3A1P02461 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.97■□□□□ 0.63
COL3A1P02461 AC098934.1-203ENST00000442868 1262 ntBASIC18.97■□□□□ 0.63
COL3A1P02461 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.97■□□□□ 0.63
COL3A1P02461 AC005041.3-201ENST00000606287 649 ntBASIC18.97■□□□□ 0.63
COL3A1P02461 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 TP53-221ENST00000615910 1149 ntTSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL3A1P02461 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC18.97■□□□□ 0.63
COL3A1P02461 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL3A1P02461 AL512430.1-201ENST00000392575 860 ntBASIC18.97■□□□□ 0.63
COL3A1P02461 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 MAGEA5-201ENST00000446757 942 ntBASIC18.97■□□□□ 0.63
COL3A1P02461 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC18.97■□□□□ 0.63
COL3A1P02461 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
COL3A1P02461 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms