Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 AC090505.1-201ENST00000430515 1834 ntBASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 ABCD1P4-201ENST00000399687 604 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 SEPHS2P1-201ENST00000511618 1162 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 KNOP1P1-201ENST00000542108 989 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 CES1P2-201ENST00000566467 1242 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 AC084262.1-201ENST00000567818 751 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 WARS-203ENST00000358655 2466 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 BATF-202ENST00000555504 361 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 ANKRD26P1-203ENST00000569528 966 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 TYMSP2-201ENST00000589501 424 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK3Q9BYB0 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 RN7SL832P-201ENST00000607781 1756 ntBASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 OR7E115P-201ENST00000382617 1024 ntBASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 SNORA57-201ENST00000383870 149 ntBASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 FAM21EP-201ENST00000417804 985 ntBASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 OR51A9P-201ENST00000422578 911 ntBASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 IGKV1OR-2-201ENST00000457995 350 ntBASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 CD81-209ENST00000492627 886 ntTSL 3 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 CD44-224ENST00000526669 870 ntTSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SHANK3Q9BYB0 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms