Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 KLF2P2-201ENST00000416807 1039 ntBASIC16.79■□□□□ 0.28
ERCC4Q92889 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC4Q92889 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.79■□□□□ 0.28
ERCC4Q92889 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
ERCC4Q92889 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.79■□□□□ 0.28
ERCC4Q92889 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
ERCC4Q92889 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC4Q92889 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC4Q92889 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC4Q92889 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ERCC4Q92889 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC4Q92889 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 SALL4P5-201ENST00000419001 1760 ntBASIC16.79■□□□□ 0.28
ERCC4Q92889 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
ERCC4Q92889 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC4Q92889 KRT8P22-201ENST00000562317 1415 ntBASIC16.79■□□□□ 0.28
ERCC4Q92889 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC4Q92889 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.78■□□□□ 0.28
ERCC4Q92889 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC4Q92889 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
ERCC4Q92889 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 AC105206.1-202ENST00000314927 2368 ntBASIC16.78■□□□□ 0.28
ERCC4Q92889 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.78■□□□□ 0.28
ERCC4Q92889 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
ERCC4Q92889 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.78■□□□□ 0.28
ERCC4Q92889 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.78■□□□□ 0.28
ERCC4Q92889 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.78■□□□□ 0.28
ERCC4Q92889 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.78■□□□□ 0.28
ERCC4Q92889 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ERCC4Q92889 AC008761.3-201ENST00000624803 892 ntBASIC16.78■□□□□ 0.28
ERCC4Q92889 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC4Q92889 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC4Q92889 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC4Q92889 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC4Q92889 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC4Q92889 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC4Q92889 SLC7A15P-201ENST00000424028 1363 ntBASIC16.77■□□□□ 0.28
ERCC4Q92889 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC4Q92889 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 RN7SL832P-201ENST00000607781 1756 ntBASIC16.77■□□□□ 0.28
ERCC4Q92889 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC4Q92889 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
ERCC4Q92889 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
ERCC4Q92889 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC4Q92889 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms