Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 KRT18P25-201ENST00000508931 1278 ntBASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 API5-211ENST00000534695 560 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 AP001063.1-201ENST00000568332 529 ntBASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 AC004233.3-201ENST00000607794 1269 ntBASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 WFDC1-204ENST00000613603 549 ntBASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 CLUHP2-201ENST00000426660 1303 ntBASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 AL391825.1-201ENST00000457671 1364 ntBASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 AC107918.4-201ENST00000641966 3141 ntBASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 ACKR1-201ENST00000368121 1240 ntBASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 TSPY16P-201ENST00000449843 468 ntBASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 AC138696.2-201ENST00000607376 223 ntBASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 AC105206.1-202ENST00000314927 2368 ntBASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ATG4AQ8WYN0 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AC087499.6-201ENST00000411576 835 ntBASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 295 ms