Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
COL4A4P53420 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 AC006504.5-208ENST00000588784 2401 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 PIFO-201ENST00000369737 746 ntTSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.31■□□□□ 0.04
COL4A4P53420 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC15.31■□□□□ 0.04
COL4A4P53420 BRI3P1-201ENST00000440440 378 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 GNG10P1-201ENST00000452289 199 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 IGHEP1-201ENST00000521393 651 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.31■□□□□ 0.04
COL4A4P53420 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC15.31■□□□□ 0.04
COL4A4P53420 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC15.31■□□□□ 0.04
COL4A4P53420 AC007250.1-201ENST00000608934 338 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 TP53-221ENST00000615910 1149 ntTSL 5 BASIC15.31■□□□□ 0.04
COL4A4P53420 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 BX640514.1-201ENST00000583223 1918 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL4A4P53420 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL4A4P53420 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 BRD7P5-201ENST00000299197 1822 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
COL4A4P53420 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
COL4A4P53420 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL4A4P53420 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.3■□□□□ 0.04
COL4A4P53420 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL4A4P53420 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.3■□□□□ 0.04
COL4A4P53420 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
COL4A4P53420 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL4A4P53420 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.3■□□□□ 0.04
COL4A4P53420 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC15.3■□□□□ 0.04
COL4A4P53420 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.3■□□□□ 0.04
COL4A4P53420 NME6-208ENST00000435684 599 ntTSL 2 BASIC15.3■□□□□ 0.04
COL4A4P53420 RPL35P9-201ENST00000446059 350 ntBASIC15.3■□□□□ 0.04
COL4A4P53420 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC15.3■□□□□ 0.04
COL4A4P53420 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC15.3■□□□□ 0.04
COL4A4P53420 AL132994.1-201ENST00000554098 400 ntBASIC15.3■□□□□ 0.04
COL4A4P53420 AL133467.4-201ENST00000602953 725 ntBASIC15.3■□□□□ 0.04
COL4A4P53420 AC021016.3-201ENST00000608367 477 ntBASIC15.3■□□□□ 0.04
COL4A4P53420 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC15.3■□□□□ 0.04
COL4A4P53420 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.3■□□□□ 0.04
COL4A4P53420 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 AC021305.1-201ENST00000520656 1514 ntBASIC15.3■□□□□ 0.04
COL4A4P53420 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.3■□□□□ 0.04
COL4A4P53420 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL4A4P53420 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
COL4A4P53420 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.3■□□□□ 0.04
COL4A4P53420 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL4A4P53420 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL4A4P53420 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC15.3■□□□□ 0.04
COL4A4P53420 FTX-216ENST00000638985 1367 ntTSL 5 BASIC15.3■□□□□ 0.04
COL4A4P53420 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL4A4P53420 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL4A4P53420 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 AL596257.1-201ENST00000641463 2694 ntBASIC15.29■□□□□ 0.04
COL4A4P53420 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC15.29■□□□□ 0.04
COL4A4P53420 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL4A4P53420 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 RN7SL582P-201ENST00000491078 279 ntBASIC15.29■□□□□ 0.04
COL4A4P53420 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 IGHEP2-201ENST00000519308 1256 ntBASIC15.29■□□□□ 0.04
COL4A4P53420 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC15.29■□□□□ 0.04
COL4A4P53420 KLF17P1-201ENST00000547105 1126 ntBASIC15.29■□□□□ 0.04
COL4A4P53420 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC15.29■□□□□ 0.04
COL4A4P53420 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 NT5C-204ENST00000578337 582 ntTSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms