Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CDX1P47902 AC106818.1-201ENST00000623223 3242 ntBASIC12.16□□□□□ -0.46
CDX1P47902 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.16□□□□□ -0.46
CDX1P47902 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
CDX1P47902 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC12.16□□□□□ -0.46
CDX1P47902 AL133267.1-201ENST00000398220 340 ntBASIC12.16□□□□□ -0.46
CDX1P47902 AL512384.1-201ENST00000406683 331 ntBASIC12.16□□□□□ -0.46
CDX1P47902 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC12.16□□□□□ -0.46
CDX1P47902 WBP2-203ENST00000433525 928 ntTSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC12.16□□□□□ -0.46
CDX1P47902 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.16□□□□□ -0.46
CDX1P47902 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.16□□□□□ -0.46
CDX1P47902 WASH4P-201ENST00000564273 1246 ntBASIC12.16□□□□□ -0.46
CDX1P47902 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC12.16□□□□□ -0.46
CDX1P47902 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 AC097359.2-201ENST00000604992 2389 ntBASIC12.16□□□□□ -0.46
CDX1P47902 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 AC130686.1-201ENST00000622936 2466 ntBASIC12.16□□□□□ -0.46
CDX1P47902 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.16□□□□□ -0.46
CDX1P47902 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CDX1P47902 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CDX1P47902 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.15□□□□□ -0.46
CDX1P47902 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
CDX1P47902 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC12.15□□□□□ -0.46
CDX1P47902 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC12.15□□□□□ -0.46
CDX1P47902 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CDX1P47902 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC12.15□□□□□ -0.46
CDX1P47902 INE1-201ENST00000456273 945 ntBASIC12.15□□□□□ -0.46
CDX1P47902 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC12.15□□□□□ -0.46
CDX1P47902 CFL1-212ENST00000531413 636 ntTSL 3 BASIC12.15□□□□□ -0.46
CDX1P47902 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.15□□□□□ -0.46
CDX1P47902 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms