Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 HSPA7-201ENST00000445535 1927 ntBASIC17.26■□□□□ 0.35
NEDD4P46934 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 AC090505.1-201ENST00000430515 1834 ntBASIC17.26■□□□□ 0.35
NEDD4P46934 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.26■□□□□ 0.35
NEDD4P46934 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC17.26■□□□□ 0.35
NEDD4P46934 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NEDD4P46934 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.26■□□□□ 0.35
NEDD4P46934 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
NEDD4P46934 DPM3-202ENST00000368399 517 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 MIR1247-201ENST00000408206 136 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.25■□□□□ 0.35
NEDD4P46934 FAM58BP-201ENST00000439056 645 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 AC004898.1-201ENST00000451057 766 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.25■□□□□ 0.35
NEDD4P46934 HLA-J-204ENST00000495278 958 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.25■□□□□ 0.35
NEDD4P46934 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
NEDD4P46934 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.25■□□□□ 0.35
NEDD4P46934 AC008805.1-201ENST00000590892 364 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 AL022328.3-201ENST00000607943 679 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 AL023803.2-201ENST00000620080 638 ntBASIC17.25■□□□□ 0.35
NEDD4P46934 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
NEDD4P46934 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.25■□□□□ 0.35
NEDD4P46934 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.25■□□□□ 0.35
NEDD4P46934 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.25■□□□□ 0.35
NEDD4P46934 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.25■□□□□ 0.35
NEDD4P46934 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NEDD4P46934 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC17.25■□□□□ 0.35
NEDD4P46934 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
NEDD4P46934 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.24■□□□□ 0.35
NEDD4P46934 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 NPPA-201ENST00000376476 728 ntTSL 3 BASIC17.24■□□□□ 0.35
NEDD4P46934 KRT18P36-201ENST00000411618 1276 ntBASIC17.24■□□□□ 0.35
NEDD4P46934 AC104073.2-201ENST00000453737 312 ntBASIC17.24■□□□□ 0.35
NEDD4P46934 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC17.24■□□□□ 0.35
NEDD4P46934 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 AC009884.2-201ENST00000603110 324 ntBASIC17.24■□□□□ 0.35
NEDD4P46934 DDX5-235ENST00000630471 473 ntTSL 4 BASIC17.24■□□□□ 0.35
NEDD4P46934 AC004923.1-202ENST00000642106 209 ntBASIC17.24■□□□□ 0.35
NEDD4P46934 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
NEDD4P46934 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NEDD4P46934 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
NEDD4P46934 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms