Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC17.22■□□□□ 0.35
BRCA1P38398 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.22■□□□□ 0.35
BRCA1P38398 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
BRCA1P38398 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
BRCA1P38398 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC17.22■□□□□ 0.35
BRCA1P38398 EEF1DP7-201ENST00000580496 513 ntBASIC17.22■□□□□ 0.35
BRCA1P38398 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
BRCA1P38398 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRCA1P38398 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
BRCA1P38398 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
BRCA1P38398 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
BRCA1P38398 AC064850.1-201ENST00000413279 1398 ntBASIC17.21■□□□□ 0.35
BRCA1P38398 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRCA1P38398 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
BRCA1P38398 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
BRCA1P38398 RPL10-203ENST00000406022 748 ntTSL 3 BASIC17.21■□□□□ 0.35
BRCA1P38398 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
BRCA1P38398 ISL1-203ENST00000511384 981 ntTSL 5 BASIC17.21■□□□□ 0.35
BRCA1P38398 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC17.21■□□□□ 0.35
BRCA1P38398 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC17.21■□□□□ 0.35
BRCA1P38398 NF1P11-201ENST00000621292 1282 ntBASIC17.21■□□□□ 0.35
BRCA1P38398 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC17.21■□□□□ 0.35
BRCA1P38398 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC17.21■□□□□ 0.35
BRCA1P38398 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRCA1P38398 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
BRCA1P38398 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRCA1P38398 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRCA1P38398 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC17.21■□□□□ 0.35
BRCA1P38398 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.21■□□□□ 0.35
BRCA1P38398 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRCA1P38398 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
BRCA1P38398 AC136621.1-201ENST00000624017 2304 ntBASIC17.21■□□□□ 0.34
BRCA1P38398 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.2■□□□□ 0.34
BRCA1P38398 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC17.2■□□□□ 0.34
BRCA1P38398 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC17.2■□□□□ 0.34
BRCA1P38398 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC17.2■□□□□ 0.34
BRCA1P38398 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC17.2■□□□□ 0.34
BRCA1P38398 INO80E-209ENST00000567254 625 ntTSL 2 BASIC17.2■□□□□ 0.34
BRCA1P38398 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC17.2■□□□□ 0.34
BRCA1P38398 HCG18-241ENST00000602290 821 ntTSL 2 BASIC17.2■□□□□ 0.34
BRCA1P38398 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
BRCA1P38398 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 Z98885.3-201ENST00000624882 1757 ntBASIC17.2■□□□□ 0.34
BRCA1P38398 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 TBC1D27-202ENST00000424239 1573 ntBASIC17.2■□□□□ 0.34
BRCA1P38398 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.2■□□□□ 0.34
BRCA1P38398 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.2■□□□□ 0.34
BRCA1P38398 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
BRCA1P38398 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.2■□□□□ 0.34
BRCA1P38398 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 SNRPCP15-201ENST00000424055 192 ntBASIC17.2■□□□□ 0.34
BRCA1P38398 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC17.2■□□□□ 0.34
BRCA1P38398 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC17.2■□□□□ 0.34
BRCA1P38398 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.2■□□□□ 0.34
BRCA1P38398 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
BRCA1P38398 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC17.2■□□□□ 0.34
BRCA1P38398 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
BRCA1P38398 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
BRCA1P38398 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.2■□□□□ 0.34
BRCA1P38398 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRCA1P38398 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.19■□□□□ 0.34
BRCA1P38398 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.19■□□□□ 0.34
BRCA1P38398 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 AC132812.1-201ENST00000583145 892 ntBASIC17.19■□□□□ 0.34
BRCA1P38398 AC048382.6-201ENST00000621980 1223 ntBASIC17.19■□□□□ 0.34
BRCA1P38398 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC17.19■□□□□ 0.34
BRCA1P38398 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms