Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC16.83■□□□□ 0.28
SCN4AP35499 OR3A1-202ENST00000615105 966 ntBASIC16.83■□□□□ 0.28
SCN4AP35499 AC106782.5-201ENST00000616011 337 ntBASIC16.83■□□□□ 0.28
SCN4AP35499 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.83■□□□□ 0.28
SCN4AP35499 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SCN4AP35499 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SCN4AP35499 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.83■□□□□ 0.28
SCN4AP35499 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SCN4AP35499 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.83■□□□□ 0.28
SCN4AP35499 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SCN4AP35499 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.83■□□□□ 0.28
SCN4AP35499 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SCN4AP35499 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SCN4AP35499 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SCN4AP35499 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
SCN4AP35499 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.83■□□□□ 0.28
SCN4AP35499 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SCN4AP35499 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC16.82■□□□□ 0.28
SCN4AP35499 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 PCDH8P1-201ENST00000428983 2773 ntBASIC16.82■□□□□ 0.28
SCN4AP35499 KRT18P33-201ENST00000398525 1043 ntBASIC16.82■□□□□ 0.28
SCN4AP35499 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.82■□□□□ 0.28
SCN4AP35499 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC16.82■□□□□ 0.28
SCN4AP35499 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SCN4AP35499 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SCN4AP35499 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 PCDHA1-201ENST00000378133 2726 ntBASIC16.82■□□□□ 0.28
SCN4AP35499 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SCN4AP35499 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC16.82■□□□□ 0.28
SCN4AP35499 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC16.82■□□□□ 0.28
SCN4AP35499 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 AIG1-203ENST00000367596 559 ntTSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC16.82■□□□□ 0.28
SCN4AP35499 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC16.82■□□□□ 0.28
SCN4AP35499 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC16.82■□□□□ 0.28
SCN4AP35499 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 PEBP1P3-201ENST00000455475 548 ntBASIC16.82■□□□□ 0.28
SCN4AP35499 GRAMD4P6-201ENST00000556999 244 ntBASIC16.82■□□□□ 0.28
SCN4AP35499 ABCC6P1-203ENST00000565566 1170 ntBASIC16.82■□□□□ 0.28
SCN4AP35499 EEF1DP7-201ENST00000580496 513 ntBASIC16.82■□□□□ 0.28
SCN4AP35499 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC16.82■□□□□ 0.28
SCN4AP35499 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC16.82■□□□□ 0.28
SCN4AP35499 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SCN4AP35499 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SCN4AP35499 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SCN4AP35499 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.81■□□□□ 0.28
SCN4AP35499 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SCN4AP35499 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SCN4AP35499 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SCN4AP35499 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
SCN4AP35499 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 MIR339-201ENST00000362153 94 ntBASIC16.81■□□□□ 0.28
SCN4AP35499 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC16.81■□□□□ 0.28
SCN4AP35499 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SCN4AP35499 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC16.81■□□□□ 0.28
SCN4AP35499 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC16.81■□□□□ 0.28
SCN4AP35499 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.81■□□□□ 0.28
SCN4AP35499 SORD2P-201ENST00000558556 1069 ntBASIC16.81■□□□□ 0.28
SCN4AP35499 RN7SL605P-201ENST00000577229 281 ntBASIC16.81■□□□□ 0.28
SCN4AP35499 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 AC020658.6-201ENST00000623564 1870 ntBASIC16.81■□□□□ 0.28
SCN4AP35499 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
SCN4AP35499 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SCN4AP35499 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCN4AP35499 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms