Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC19.21■□□□□ 0.67
HOXC9P31274 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC19.21■□□□□ 0.67
HOXC9P31274 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
HOXC9P31274 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC19.21■□□□□ 0.67
HOXC9P31274 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HOXC9P31274 AC092384.3-202ENST00000564646 2873 ntBASIC19.21■□□□□ 0.67
HOXC9P31274 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC19.21■□□□□ 0.66
HOXC9P31274 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC19.2■□□□□ 0.66
HOXC9P31274 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 AC067931.2-201ENST00000623655 2003 ntBASIC19.2■□□□□ 0.66
HOXC9P31274 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HOXC9P31274 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HOXC9P31274 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC19.2■□□□□ 0.66
HOXC9P31274 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC19.2■□□□□ 0.66
HOXC9P31274 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC19.2■□□□□ 0.66
HOXC9P31274 AC092638.2-201ENST00000441105 947 ntBASIC19.2■□□□□ 0.66
HOXC9P31274 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC19.2■□□□□ 0.66
HOXC9P31274 AC095040.1-201ENST00000513286 675 ntBASIC19.2■□□□□ 0.66
HOXC9P31274 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC19.2■□□□□ 0.66
HOXC9P31274 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC19.2■□□□□ 0.66
HOXC9P31274 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC19.2■□□□□ 0.66
HOXC9P31274 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HOXC9P31274 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.2■□□□□ 0.66
HOXC9P31274 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC9P31274 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HOXC9P31274 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HOXC9P31274 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC9P31274 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXC9P31274 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC19.19■□□□□ 0.66
HOXC9P31274 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXC9P31274 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXC9P31274 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
HOXC9P31274 AL133467.4-201ENST00000602953 725 ntBASIC19.19■□□□□ 0.66
HOXC9P31274 AC007250.1-201ENST00000608934 338 ntBASIC19.19■□□□□ 0.66
HOXC9P31274 AC104506.1-201ENST00000609247 429 ntBASIC19.19■□□□□ 0.66
HOXC9P31274 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HOXC9P31274 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC9P31274 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 FTX-216ENST00000638985 1367 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC9P31274 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC9P31274 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
HOXC9P31274 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
HOXC9P31274 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HOXC9P31274 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 RN7SKP109-201ENST00000410592 316 ntBASIC19.18■□□□□ 0.66
HOXC9P31274 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXC9P31274 AC018638.5-201ENST00000450885 754 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms