Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL5A1P20908 AL354702.1-201ENST00000442006 1960 ntBASIC13.77□□□□□ -0.2
COL5A1P20908 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.77□□□□□ -0.2
COL5A1P20908 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
COL5A1P20908 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.2
COL5A1P20908 FUCA1P1-201ENST00000374476 1351 ntBASIC13.77□□□□□ -0.2
COL5A1P20908 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
COL5A1P20908 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL5A1P20908 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL5A1P20908 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL5A1P20908 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL5A1P20908 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC13.77□□□□□ -0.2
COL5A1P20908 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL5A1P20908 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
COL5A1P20908 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
COL5A1P20908 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.77□□□□□ -0.21
COL5A1P20908 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
COL5A1P20908 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.77□□□□□ -0.21
COL5A1P20908 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.77□□□□□ -0.21
COL5A1P20908 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.77□□□□□ -0.21
COL5A1P20908 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.77□□□□□ -0.21
COL5A1P20908 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 BX679664.3-201ENST00000414070 555 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 GRPEL2P1-201ENST00000453145 339 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 AGPAT5P1-201ENST00000455855 1019 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 RN7SL494P-201ENST00000461517 304 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 AC113935.1-201ENST00000471722 555 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
COL5A1P20908 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC13.77□□□□□ -0.21
COL5A1P20908 SORD2P-201ENST00000558556 1069 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC13.77□□□□□ -0.21
COL5A1P20908 AP005264.5-201ENST00000590066 467 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 HMGB1P24-201ENST00000611897 328 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC13.77□□□□□ -0.21
COL5A1P20908 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
COL5A1P20908 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
COL5A1P20908 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
COL5A1P20908 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 AL109809.1-201ENST00000418979 1367 ntBASIC13.77□□□□□ -0.21
COL5A1P20908 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL5A1P20908 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.76□□□□□ -0.21
COL5A1P20908 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL5A1P20908 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC13.76□□□□□ -0.21
COL5A1P20908 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC13.76□□□□□ -0.21
COL5A1P20908 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC13.76□□□□□ -0.21
COL5A1P20908 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 PEBP1P2-201ENST00000603980 558 ntBASIC13.76□□□□□ -0.21
COL5A1P20908 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.76□□□□□ -0.21
COL5A1P20908 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 MIR1301-201ENST00000408518 82 ntBASIC13.76□□□□□ -0.21
COL5A1P20908 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC13.76□□□□□ -0.21
COL5A1P20908 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL5A1P20908 AC005740.1-201ENST00000515639 522 ntBASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms