Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 AC116337.3-201ENST00000505200 846 ntTSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 USB1-205ENST00000561743 1135 ntTSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 AC008567.2-201ENST00000589751 656 ntTSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC15.03■□□□□ -0
COL9A1P20849 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.03■□□□□ -0
COL9A1P20849 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.03■□□□□ -0
COL9A1P20849 AL157813.1-201ENST00000612996 587 ntBASIC15.03■□□□□ -0
COL9A1P20849 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.03■□□□□ -0
COL9A1P20849 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC15.03■□□□□ -0
COL9A1P20849 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC15.03■□□□□ -0
COL9A1P20849 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
COL9A1P20849 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL9A1P20849 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.03■□□□□ -0
COL9A1P20849 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.03■□□□□ -0
COL9A1P20849 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL9A1P20849 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL9A1P20849 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.03■□□□□ -0
COL9A1P20849 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.03■□□□□ -0
COL9A1P20849 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.02■□□□□ -0
COL9A1P20849 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.02■□□□□ -0
COL9A1P20849 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.02■□□□□ -0
COL9A1P20849 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.02■□□□□ -0
COL9A1P20849 AC087481.3-201ENST00000602886 1894 ntBASIC15.02■□□□□ -0
COL9A1P20849 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.02■□□□□ -0
COL9A1P20849 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.02■□□□□ -0
COL9A1P20849 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
COL9A1P20849 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 AL121949.1-201ENST00000402043 968 ntBASIC15.02■□□□□ -0
COL9A1P20849 TSPY25P-201ENST00000429463 745 ntBASIC15.02■□□□□ -0
COL9A1P20849 AC007881.1-201ENST00000437460 187 ntBASIC15.02■□□□□ -0
COL9A1P20849 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC15.02■□□□□ -0
COL9A1P20849 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.02■□□□□ -0
COL9A1P20849 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL9A1P20849 AC078814.4-201ENST00000546650 327 ntBASIC15.02■□□□□ -0
COL9A1P20849 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC15.02■□□□□ -0
COL9A1P20849 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC15.02■□□□□ -0
COL9A1P20849 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC15.02■□□□□ -0
COL9A1P20849 HERC2P11-201ENST00000562845 725 ntBASIC15.02■□□□□ -0
COL9A1P20849 AC100756.2-201ENST00000569537 736 ntBASIC15.02■□□□□ -0
COL9A1P20849 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC15.02■□□□□ -0
COL9A1P20849 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC15.02■□□□□ -0
COL9A1P20849 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC15.02■□□□□ -0
COL9A1P20849 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL9A1P20849 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL9A1P20849 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.02□□□□□ -0.01
COL9A1P20849 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
COL9A1P20849 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.02□□□□□ -0.01
COL9A1P20849 AC006058.4-201ENST00000624016 1670 ntBASIC15.02□□□□□ -0.01
COL9A1P20849 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL9A1P20849 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
COL9A1P20849 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
COL9A1P20849 AC112693.3-201ENST00000624819 1983 ntBASIC15.02□□□□□ -0.01
COL9A1P20849 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL9A1P20849 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL9A1P20849 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
COL9A1P20849 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 AL109809.1-201ENST00000418979 1367 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.01□□□□□ -0.01
COL9A1P20849 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.01□□□□□ -0.01
COL9A1P20849 KRT18P44-201ENST00000416086 1285 ntBASIC15.01□□□□□ -0.01
COL9A1P20849 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC15.01□□□□□ -0.01
COL9A1P20849 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL9A1P20849 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms