Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.05□□□□□ -0.16
SDC1P18827 AC106820.3-201ENST00000561653 397 ntBASIC14.05□□□□□ -0.16
SDC1P18827 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.05□□□□□ -0.16
SDC1P18827 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 GNRHR2-203ENST00000581100 1187 ntBASIC14.05□□□□□ -0.16
SDC1P18827 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.05□□□□□ -0.16
SDC1P18827 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.05□□□□□ -0.16
SDC1P18827 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SDC1P18827 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 CRB3P1-201ENST00000449338 276 ntBASIC14.04□□□□□ -0.16
SDC1P18827 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 AP001889.1-201ENST00000525414 633 ntBASIC14.04□□□□□ -0.16
SDC1P18827 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.04□□□□□ -0.16
SDC1P18827 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.04□□□□□ -0.16
SDC1P18827 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.04□□□□□ -0.16
SDC1P18827 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.04□□□□□ -0.16
SDC1P18827 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 ECM1P1-201ENST00000604092 1279 ntBASIC14.04□□□□□ -0.16
SDC1P18827 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.04□□□□□ -0.16
SDC1P18827 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDC1P18827 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SDC1P18827 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 AC089987.1-201ENST00000551654 2209 ntBASIC14.03□□□□□ -0.16
SDC1P18827 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SDC1P18827 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.03□□□□□ -0.16
SDC1P18827 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms