Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PDGFBP01127 AC009093.10-201ENST00000641956 1442 ntBASIC14.57□□□□□ -0.08
PDGFBP01127 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PDGFBP01127 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PDGFBP01127 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
PDGFBP01127 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PDGFBP01127 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
PDGFBP01127 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PDGFBP01127 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PDGFBP01127 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
PDGFBP01127 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.56□□□□□ -0.08
PDGFBP01127 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
PDGFBP01127 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.56□□□□□ -0.08
PDGFBP01127 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
PDGFBP01127 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC14.56□□□□□ -0.08
PDGFBP01127 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.56□□□□□ -0.08
PDGFBP01127 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC14.56□□□□□ -0.08
PDGFBP01127 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 HNRNPA1P16-201ENST00000575692 955 ntBASIC14.56□□□□□ -0.08
PDGFBP01127 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.56□□□□□ -0.08
PDGFBP01127 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 AC090616.6-203ENST00000579186 1945 ntBASIC14.56□□□□□ -0.08
PDGFBP01127 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
PDGFBP01127 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.56□□□□□ -0.08
PDGFBP01127 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.56□□□□□ -0.08
PDGFBP01127 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PDGFBP01127 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.55□□□□□ -0.08
PDGFBP01127 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
PDGFBP01127 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.55□□□□□ -0.08
PDGFBP01127 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
PDGFBP01127 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.55□□□□□ -0.08
PDGFBP01127 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 PIFO-201ENST00000369737 746 ntTSL 2 BASIC14.55□□□□□ -0.08
PDGFBP01127 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 AP000354.1-201ENST00000396982 456 ntBASIC14.55□□□□□ -0.08
PDGFBP01127 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 AC104961.1-201ENST00000427605 771 ntBASIC14.55□□□□□ -0.08
PDGFBP01127 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC14.55□□□□□ -0.08
PDGFBP01127 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 RHOQP2-201ENST00000449922 579 ntBASIC14.55□□□□□ -0.08
PDGFBP01127 AC092896.1-201ENST00000465850 380 ntBASIC14.55□□□□□ -0.08
PDGFBP01127 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.55□□□□□ -0.08
PDGFBP01127 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC14.55□□□□□ -0.08
PDGFBP01127 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 KNOP1P1-201ENST00000542108 989 ntBASIC14.55□□□□□ -0.08
PDGFBP01127 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 FBXO36P1-201ENST00000579006 471 ntBASIC14.55□□□□□ -0.08
PDGFBP01127 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.55□□□□□ -0.08
PDGFBP01127 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
PDGFBP01127 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC14.55□□□□□ -0.08
PDGFBP01127 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PDGFBP01127 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.55□□□□□ -0.08
PDGFBP01127 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms