Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AC015922.1-201ENST00000421102 1152 ntBASIC10.84□□□□□ -0.67
SMKR1H3BMG3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AC069335.1-201ENST00000489972 472 ntBASIC10.84□□□□□ -0.67
SMKR1H3BMG3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 USO1-201ENST00000264904 4135 ntTSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 KRT8P12-202ENST00000472924 1397 ntBASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 AL122018.1-201ENST00000446607 2310 ntBASIC10.84□□□□□ -0.67
SMKR1H3BMG3 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 KRT8P14-201ENST00000414254 1442 ntBASIC10.84□□□□□ -0.67
SMKR1H3BMG3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
SMKR1H3BMG3 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AC004945.1-201ENST00000416738 983 ntBASIC10.83□□□□□ -0.68
SMKR1H3BMG3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AL592309.1-201ENST00000443127 649 ntBASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 LINC01115-203ENST00000606068 577 ntBASIC10.83□□□□□ -0.68
SMKR1H3BMG3 LINC00628-201ENST00000628516 1289 ntBASIC10.83□□□□□ -0.68
SMKR1H3BMG3 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
SMKR1H3BMG3 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms