Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA2Q9Y261 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MYADML-201ENST00000474610 2147 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 ADK-205ENST00000539909 1866 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 TCAM1P-207ENST00000485295 1537 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 RNU1-114P-201ENST00000365297 166 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MGST3-203ENST00000367885 680 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 GIMAP3P-201ENST00000495150 836 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AC068587.3-201ENST00000526613 355 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MIR5189-201ENST00000577370 114 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MIR6074-201ENST00000612054 107 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC11.98□□□□□ -0.49
FOXA2Q9Y261 MBLAC2-202ENST00000514906 1936 ntBASIC11.98□□□□□ -0.49
FOXA2Q9Y261 AC104581.4-201ENST00000623126 3052 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 LRRC59-203ENST00000576448 1531 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms