Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 ACKR1-201ENST00000368121 1240 ntBASIC14.56□□□□□ -0.08
MKS1Q9NXB0 ARSEP1-201ENST00000420443 635 ntBASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AC027237.1-201ENST00000560942 655 ntBASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.56□□□□□ -0.08
MKS1Q9NXB0 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 CICP20-201ENST00000443330 2801 ntBASIC14.56□□□□□ -0.08
MKS1Q9NXB0 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AL161932.2-201ENST00000435436 679 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 GNAQP1-201ENST00000444815 1067 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PUDPP3-201ENST00000445368 636 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AC055876.2-201ENST00000531834 546 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AC135782.3-201ENST00000562782 2105 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AC005252.2-201ENST00000624630 1141 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AC008761.3-201ENST00000624803 892 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AC145098.2-201ENST00000623593 3026 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 AC004241.5-201ENST00000623870 2448 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 NUTM2HP-201ENST00000442076 2498 ntBASIC14.55□□□□□ -0.08
MKS1Q9NXB0 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
MKS1Q9NXB0 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms