Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 LINC00554-201ENST00000564841 3011 ntBASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK3Q9BYB0 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AC103592.1-201ENST00000394513 664 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AC092903.1-201ENST00000466506 262 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 RN7SL288P-201ENST00000490496 291 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AC068831.5-201ENST00000557387 328 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 GGNBP1-204ENST00000613113 887 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 CR392039.1-201ENST00000623217 204 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AL049840.2-201ENST00000602722 535 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 AC090510.3-201ENST00000615831 821 ntBASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK3Q9BYB0 HPD-204ENST00000543163 1709 ntTSL 5 BASIC18.39■□□□□ 0.54
SHANK3Q9BYB0 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
SHANK3Q9BYB0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
SHANK3Q9BYB0 TCAF2P1-201ENST00000291129 2421 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AP000354.1-201ENST00000396982 456 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 KRT18P62-201ENST00000446618 1287 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 TPT1P11-201ENST00000458482 498 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 RN7SL128P-201ENST00000467883 305 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AC090136.2-201ENST00000517809 420 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AC073347.1-201ENST00000421633 2643 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 AC068760.1-201ENST00000493579 1953 ntBASIC18.39■□□□□ 0.53
SHANK3Q9BYB0 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 IFNWP2-201ENST00000431203 580 ntBASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 RN7SL375P-201ENST00000492442 298 ntBASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK3Q9BYB0 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms